Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1094 311 1e-79 seq868 158 1e-33 >seq1094 Length=98106 Score = 311 bits (344), Expect = 1e-79 Identities = 1170/1808 (65%), Gaps = 39/1808 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || ||||||| || | || |||| || ||||| |||| | Sbjct 28780 TACTTTGGATTCAAGACTCTTGAGA-GATCATACCTTCTCCGTCTCGAGGGCAAGATTGC 28838 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| ||||| ||||| | || || |||| || |||||||| || ||||| Sbjct 28839 CGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATATTGA 28898 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || | ||||||||| | ||||||| |||| | | || ||||| | ||| Sbjct 28899 GAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACA--CACGCGTCTCCA 28956 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 |||||||| || || |||||| | | || | || |||||| | |||| || Sbjct 28957 ACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATG 29016 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| ||| ||||||| || | ||||| | | ||||| ||||| ||| Sbjct 29017 AAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAG 29076 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||||| ||||| || || | |||| | | |||| | | || ||| Sbjct 29077 AATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATTGCT 29136 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||| || | || | |||||| |||| ||||| || || || ||| |||||| Sbjct 29137 GGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCC 29196 Query 75563 CGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 | ||||| | || | || | ||| || | ||||| ||||| | || ||| Sbjct 29197 AGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCA 29256 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| || ||| || | ||||||||||| | || ||||| || | || || | | Sbjct 29257 TGGCACGCTGATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGAGGAAGTT 29316 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | |||||||| | | || ||||||||||| || ||||||||||| |||||| Sbjct 29317 CGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAG 29376 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || |||| |||| | || | || || || || || ||||| | || | Sbjct 29377 AAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTAC 29436 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAG-AGGAGGGTAGAG--CCAATGCG 75856 ||||| || ||||| || ||||| ||||| || | || ||| || | ||| | Sbjct 29437 GGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAA---G 29493 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || | | || | | || | ||||| | | || ||| | | || || ||||| |||| Sbjct 29494 ACCAT-CAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAA 29552 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || | ||||| |||||||||||||| ||| |||||||| || ||||| | || || Sbjct 29553 CCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGGTAC 29612 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||| ||||| ||||| ||||| || || | || ||| | || ||| || Sbjct 29613 CATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATACTGTGCACCTGACGAGGTCGC 29672 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTT 76095 |||||| || ||||| || | || || |||| || ||||| || | | ||| | Sbjct 29673 TGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGTCAACCAAAATGATGGCAGCTA 29732 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 || | | | || ||||| || || || |||| || || | ||| |||| Sbjct 29733 CGACTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAACAAGATCAT 29792 Query 76156 TGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 |||| || | || || ||| ||| || || ||| ||| | || |||||||| Sbjct 29793 CGACATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGTCACAGACC 29849 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTG 76271 ||||| | | ||||| || |||||||| ||||| || | | | | || | |||| | Sbjct 29850 TATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGACT-CCCATTCG 29908 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | || || ||||| | | ||| | ||||| || ||||| || ||||| | || Sbjct 29909 AGTCTCCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCACGC-TGCC 29967 Query 76332 TGGAGGCGAGTTG-TGAATTGGCTGAAGC-CCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 | || | || ||| | || |||| || ||| | || ||||||| || ||||| Sbjct 29968 TTGACTTCATCTGTTGAGCTTGC-AAAGCAGCATGGTACTTACGAGACATACGAAGGTTC 30026 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAAC 76447 || || || ||||| | ||| || | ||||||| ||||||| | ||| | | || Sbjct 30027 CCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTACCGATC-TT 30084 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | ||||||| | ||| ||| |||||| || | ||||||||||||||| | | Sbjct 30085 TGGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAGTTTGCTC 30144 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || |||||||| ||| ||| |||||| | || || || || || || Sbjct 30145 GTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTGTTTCGAG 30204 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 ||||||||| | ||||||||| || | | | || ||||| || | || ||| Sbjct 30205 CCATACACATCCAACATCTACTCCCGACGTGTCTTGGCTGGTGAATTCCAAGTCGTTAAC 30264 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 | | || || || | || ||||||||||| | | |||||| | | Sbjct 30265 CCTTGGTTATTGAAGGATCTTGTCGATATGGGTCTCTGGTCAGATAACATGAAGAACCGT 30324 Query 76688 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747 || | | || |||||||| |||||| || | |||| || | ||||||||| | Sbjct 30325 ATCATCGCCGATGGAGGTTCCATCCAAAATGTCCCTAATATTCCTGCCGATATCAAGGCT 30384 Query 76748 CTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGCAGAT 76804 || ||| || || ||||| || | || | | | || || | ||||| || ||| Sbjct 30385 CTTTACAAGACTGTCTGGGAGATCTCCCAG-CGTACCA--TCGTTCAGATGGCTGCTGAT 30441 Query 76805 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATG 76864 |||||| |||||| || || ||| ||||| | |||| | |||||| ||| Sbjct 30442 CGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAACTATG 30501 Query 76865 TCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTAC 76924 |||| || | |||||| | | ||||| ||| || || ||||| |||||| Sbjct 30502 GGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGGCATGTAC 30561 Query 76925 TATCTCCG 76932 || ||||| Sbjct 30562 TACCTCCG 30569 >seq868 Length=196860 Score = 158 bits (174), Expect = 1e-33 Identities = 347/512 (68%), Gaps = 6/512 (1%) Strand=Plus/Minus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCG 65066 || || || || |||||||||| | ||||| | | |||| | | |||| | ||| Sbjct 110515 GTTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTCT 110456 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 | ||||| |||| || |||| ||||| ||| |||||||||||||||||||| || Sbjct 110455 A-CATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTC 110397 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||| | |||| | |||||||||||||| ||||| |||||||| || |||||| || Sbjct 110396 ATTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAA 110337 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGC-TCTTCAAGA 65245 || || || ||||| || || ||||||||| || |||||| || | | ||| Sbjct 110336 CGAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCC-TGCCTCTTGTTCTCCC 110278 Query 65246 CTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGA 65305 ||| || | || | | || | |||| | | | | | ||||| ||||||| Sbjct 110277 ACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGA 110218 Query 65306 TTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGA 65365 | ||| ||| |||| | || || || || ||| ||| |||| |||||| ||| Sbjct 110217 TCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTT 110158 Query 65366 AGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCAC 65425 |||| | |||||||||| || | |||||||| ||| | | || | | Sbjct 110157 TGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTC-CTCGCTCTCGGTAACGAG 110099 Query 65426 CCAT-TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAG 65484 | || || | || ||||||||||||||||| ||||| ||||| || ||| Sbjct 110098 AAGTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAG 110039 Query 65485 ACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||| |||||||| || | ||||| Sbjct 110038 ACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 110007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553716334400