Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1094 163 8e-35 seq301 122 3e-22 seq868 114 4e-20 seq816 107 6e-18 seq622 93.3 1e-13 seq676 84.2 6e-11 seq556 84.2 6e-11 >seq1094 Length=98106 Score = 163 bits (180), Expect = 8e-35 Identities = 598/927 (65%), Gaps = 17/927 (2%) Strand=Plus/Minus Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTC--GT-CGCTGTATTCTACA 155639 ||| ||| ||| |||| ||||| || || ||| ||| || | | |||||| || Sbjct 29699 AGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTC---GTCAGGTGCACAGTATTCAACT 29643 Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 ||||| ||| || || || || |||||| || | |||||||| ||| || | | Sbjct 29642 ATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGG 29583 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || |||||||||||||| || ||| | ||| |||| ||||| | || || || || || Sbjct 29582 TTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATG 29523 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | |||| || || |||| ||||||| | ||| || ||| Sbjct 29522 GAGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTC 29463 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 ||| || | | || ||||||||| |||| || || ||||||| | |||| Sbjct 29462 TCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGG 29403 Query 155880 CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAA 155939 || | ||| | ||| | ||| ||||||| ||| || | ||| ||| Sbjct 29402 CACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCAT 29343 Query 155940 ATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999 | ||| ||||| || || | || ||||| | ||||| ||||| | || || Sbjct 29342 AGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCA 29283 Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA---TTC 156056 | ||| || | ||||| || |||||| || || || || ||| |||| | Sbjct 29282 AGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGC 29223 Query 156057 CTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 | || |||||||| || ||||| | || || || ||||| || | |||||||||| | Sbjct 29222 TTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACA 29163 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 ||||| ||||| | || || || || ||| | | |||| | || | | || Sbjct 29162 ATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGG 29103 Query 156177 ATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234 | || || || ||||| || | ||| || || || || || ||| | ||||| Sbjct 29102 ACATTCAGACCGATACCTCC--AGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTAT 29045 Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGCACGAACTTAATTG 156292 | ||||||| || ||| || || | || | ||| ||| |||| ||| | ||| Sbjct 29044 CGTAAATACCGTCGATACTGTCCTCCTTCATGTCGAT-CAAGA-AGCATGAAGAGAGTTG 28987 Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGA 156352 | | ||||||| || ||| || || || || | || || |||| ||||| | || Sbjct 28986 TGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA 28927 Query 156353 CATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGAC 156412 ||| ||| ||||||||| || |||||| || | ||||||||||| || || || Sbjct 28926 CATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCAC 28867 Query 156413 CCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGC 156472 ||||| ||| || || ||||| || ||||| || || | || |||||||||| Sbjct 28866 TCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGA 28807 Query 156473 GCGTTCCAGAGTTTTAAACCCGAAATA 156499 | || ||||| || || || || || Sbjct 28806 TCTCTCAAGAGTCTTGAATCCAAAGTA 28780 >seq301 Length=99005 Score = 122 bits (134), Expect = 3e-22 Identities = 207/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||||| | ||||| | |||||| || || || ||||| || || || Sbjct 69103 CATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCTT 69044 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || | ||| | |||||| |||||||||||||||| | ||| || Sbjct 69043 AACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAGG 68984 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | || | | ||| |||||||||| ||||||| || || || | || Sbjct 68983 TGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCATC 68924 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||||| || || || | ||| | || || ||||| | || ||||||||||| || || Sbjct 68923 TTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGAC 68864 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||| || | | | ||||||| |||||||| | | ||||||||||| Sbjct 68863 AGATTGCTGACCGACCAAAGCTGTCATCTGAGAAATATTGATGGTAGAACCCTTGGAGCC 68804 >seq868 Length=196860 Score = 114 bits (126), Expect = 4e-20 Identities = 334/511 (65%), Gaps = 4/511 (1%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || || || ||||| | |||||||| | | ||||||||| |||||| | | Sbjct 110514 TTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTCTA 110455 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || ||| ||||||||||| ||||| | || ||||| || || ||| ||| | | Sbjct 110454 CATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 110395 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || |||||| || ||| | || ||||||||| | | || || || || || |||| Sbjct 110394 TCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACG 110335 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAAT 133676 | || || || | ||||| | || |||||||| |||||| | | ||| | | Sbjct 110334 AGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACT 110275 Query 133677 TAGAGCGACCACTCAA--AAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAAT 133734 | || | | | ||| || || || | |||| |||||| || || ||||| || Sbjct 110274 T-GAACCATCGTCCAAGCAAGCAAGCAG-TCCAAGACGTTATTACCGAGGCTGTTGAGAT 110217 Query 133735 TGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCT 133794 ||| || || | | | |||||| || || | | | || ||||| | || | Sbjct 110216 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 110157 Query 133795 GATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAA 133854 |||| ||| || ||||| || || ||||| | || | | | ||| || || Sbjct 110156 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 110097 Query 133855 GATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGAC 133914 | |||| |||||||| ||||| |||| ||||||| ||| | ||| |||||| Sbjct 110096 GTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAGAC 110037 Query 133915 TAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 || ||||||||| | | || ||||| ||| Sbjct 110036 CAACTTCTTCGAGAAGCGTGTCGCCGACTAC 110006 >seq816 Length=170108 Score = 107 bits (118), Expect = 6e-18 Identities = 382/590 (65%), Gaps = 18/590 (3%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | |||||||||||| || | ||||| ||| | || ||| | Sbjct 58289 ATTAGTCCACAGATGTCACACACATGGACTCTAAAGGCATCCGATACCTCGAATAATCTC 58348 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| | || ||||| |||||||||||||||||||||||||| |||||| Sbjct 58349 TCCTTCAAGAAGGACGCCGCTCCGTGCGAAATCATACAATCACGCTCCATTTCTCCGAAA 58408 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| | || | ||| || ||||||| | || ||| | | ||| Sbjct 58409 CGCAGACCACCATCTCTGGCACGACCTTCTACAGGCTGTCTGGTCAGAATCTGAACGGGA 58468 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| || ||| ||| || | |||||||| ||||| || || | | Sbjct 58469 CCTCTGGCTCGCGCATGGATCTTGTCGTCCACCATATGGCGCAGACGTTGATAATAGGTT 58528 Query 251647 GGACCGATGAAGATGCTCGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACT 251703 ||||| | ||||| || | || ||| || | ||||| || | | |||||| | Sbjct 58529 GGACCAAGGAAGA--CTTG-AGCCATCATCTTTCGCCCAGTGTGACCATGATACATGATC 58585 Query 251704 TCGTTTCCATTAGATTCATAACCAAGTTTC---TGTAGCTCTGAAGCAATATCACCAATC 251760 ||| ||| ||| | ||||||| | | | |||| ||| | |||| || Sbjct 58586 TCGAAGCCACGAGAATGATAACCATGAGCCCGGAGAAGCTTCGAAACGGAATCAACA--- 58642 Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCT 251820 ||| | | |||| || | || || | || || | || | || || | Sbjct 58643 GTGACCTCGGTAAAGGGCGTCGCATCACCCTCGAGTCCACGAAGCGTCGAAACCTTACTC 58702 Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880 | | ||| ||| ||||| || ||||||||| |||||||| ||||| |||||| Sbjct 58703 AGTTGACACTCGATCAAATGGGCAATTGTCATACGAGATGGAATAGCGTGGGGGTTGATG 58762 Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TG 251937 || | || || | || | |||||| |||||||| ||| | | ||| || Sbjct 58763 ATCAAATCCGGCACGATACCCTGGCAAGTGAATGGCATATC---TTCATGACGGTAAGTG 58819 Query 251938 TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || || || ||||| |||||||| ||||| || ||||||||||| Sbjct 58820 ATACCGATGGTACCCTTCTGTCCGTGGCGAGAGGCAAATTTATCACCAAT 58869 >seq622 Length=89095 Score = 93.3 bits (102), Expect = 1e-13 Identities = 201/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 288937 TTAAATCCATCCATACTTGTTAA-AATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 |||||||| ||||| || | ||| ||| ||||| || || ||| | |||||| ||| Sbjct 13777 TTAAATCCGTCCAT-CTCGGTAAGAATCTGATTGAGAGTGGCTTCTCGTTCATCGTTTCC 13835 Query 288996 ACCTCTTGAATCACCC-GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054 ||| | |||| | || | | | | ||| || | ||| || || || || |||| Sbjct 13836 ACCGCC-GAATGATCCAGCCTTCCCACGAGCTTTTCCGATAGCGTCGATCTCATCGATGA 13894 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | || | ||| || | || | ||| || || | ||||| || | || | || || | Sbjct 13895 AGATAATACAAGGCGTGTTCTTTCTTGCCATAGTGAATAAATCACGCACCCTCGAAGCAC 13954 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT-TGAATGAATGTTACATTT 289173 | | ||||||| |||| || || ||||| ||| |||| || |||| ||||| ||| | Sbjct 13955 CTACACCAACAAACATCTCCACGAATTCGGAACCGGAAACGCTGAA-GAATGGTACTTGA 14013 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||| || || ||| | |||||||| || |||||||||||||| || || Sbjct 14014 GATTCACCAGCGGTAGCCTTGGCCAGAAGAGTTTTACCTGTTCCAGGAGGACC 14066 >seq676 Length=219656 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556 |||| ||| ||||| ||||| || || ||||| |||||||| ||||||| | ||| || Sbjct 79989 ATCAGACAGTCACGTTCCATCTCTCCTAAACGGAGACCACCGTCGCGAGAACGACCTTCT 80048 Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616 | |||||||||||||| | | |||||| || || ||| |||||| | Sbjct 80049 GTTGGCTGACGAGTGAGGATTGCACGGGGACCGCGAGAACGTGAATGCATCTTATCTTGA 80108 Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||| |||||||| ||||||| | || |||| |||||| Sbjct 80109 ACCATGTGCTTGAGTTTCTGGTAGTAGATAGGTCCGAAGAAGAT 80152 >seq556 Length=155958 Score = 84.2 bits (92), Expect = 6e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 353913 GCGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCC-CGCTGAT 353971 |||||| || |||| |||| || |||||||| ||| |||||| || || | Sbjct 56528 GCGACCGTCAGCAACGTGCCATTGCTCAGGGCAGAGCGCACCGACGAATTCTTCGTTG-T 56586 Query 353972 GAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCG 354031 |||| || || || ||||| || ||| ||| || || ||| | ||||| | Sbjct 56587 GAGAAATCATGATAACACCTCCCTTGTAGTCACGAATAGCGACAGCAAGACCTCCAAGAG 56646 Query 354032 AGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACA 354091 | ||||| || | |||||| ||||||||||| |||| |||| || || | |||||| Sbjct 56647 AATCACGATCTAAGAAATTGGTAGGTTCGTCGAGGACGAGAAGATGGGGGTTGTTCCACA 56706 Query 354092 TTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | || | || || || |||||||| |||||||| || || || Sbjct 56707 TAGCACCTGCGAGGACAACCTTAACTTTCTGTCCACCGGAAAG 56749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471777433177810