Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 163 8e-35
seq301 122 3e-22
seq868 114 4e-20
seq816 107 6e-18
seq622 93.3 1e-13
seq676 84.2 6e-11
seq556 84.2 6e-11
>seq1094
Length=98106
Score = 163 bits (180), Expect = 8e-35
Identities = 598/927 (65%), Gaps = 17/927 (2%)
Strand=Plus/Minus
Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTC--GT-CGCTGTATTCTACA 155639
||| ||| ||| |||| ||||| || || ||| ||| || | | |||||| ||
Sbjct 29699 AGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTC---GTCAGGTGCACAGTATTCAACT 29643
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
||||| ||| || || || || |||||| || | |||||||| ||| || | |
Sbjct 29642 ATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGG 29583
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
|| |||||||||||||| || ||| | ||| |||| ||||| | || || || || ||
Sbjct 29582 TTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATG 29523
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819
||| || | |||| || || |||| ||||||| | ||| || |||
Sbjct 29522 GAGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTC 29463
Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879
||| || | | || ||||||||| |||| || || ||||||| | ||||
Sbjct 29462 TCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGG 29403
Query 155880 CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAA 155939
|| | ||| | ||| | ||| ||||||| ||| || | ||| |||
Sbjct 29402 CACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCAT 29343
Query 155940 ATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999
| ||| ||||| || || | || ||||| | ||||| ||||| | || ||
Sbjct 29342 AGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCA 29283
Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA---TTC 156056
| ||| || | ||||| || |||||| || || || || ||| |||| |
Sbjct 29282 AGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGC 29223
Query 156057 CTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116
| || |||||||| || ||||| | || || || ||||| || | |||||||||| |
Sbjct 29222 TTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACA 29163
Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176
||||| ||||| | || || || || ||| | | |||| | || | | ||
Sbjct 29162 ATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGG 29103
Query 156177 ATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234
| || || || ||||| || | ||| || || || || || ||| | |||||
Sbjct 29102 ACATTCAGACCGATACCTCC--AGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTAT 29045
Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGCACGAACTTAATTG 156292
| ||||||| || ||| || || | || | ||| ||| |||| ||| | |||
Sbjct 29044 CGTAAATACCGTCGATACTGTCCTCCTTCATGTCGAT-CAAGA-AGCATGAAGAGAGTTG 28987
Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGA 156352
| | ||||||| || ||| || || || || | || || |||| ||||| | ||
Sbjct 28986 TGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA 28927
Query 156353 CATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGAC 156412
||| ||| ||||||||| || |||||| || | ||||||||||| || || ||
Sbjct 28926 CATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCAC 28867
Query 156413 CCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGC 156472
||||| ||| || || ||||| || ||||| || || | || ||||||||||
Sbjct 28866 TCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGA 28807
Query 156473 GCGTTCCAGAGTTTTAAACCCGAAATA 156499
| || ||||| || || || || ||
Sbjct 28806 TCTCTCAAGAGTCTTGAATCCAAAGTA 28780
>seq301
Length=99005
Score = 122 bits (134), Expect = 3e-22
Identities = 207/300 (69%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| ||||||| | ||||| | |||||| || || || ||||| || || ||
Sbjct 69103 CATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCTT 69044
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| ||||| || | ||| | |||||| |||||||||||||||| | ||| ||
Sbjct 69043 AACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAGG 68984
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
| || || | || | | ||| |||||||||| ||||||| || || || | ||
Sbjct 68983 TGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCATC 68924
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||||| || || || | ||| | || || ||||| | || ||||||||||| || ||
Sbjct 68923 TTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGAC 68864
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
||||| || | | | ||||||| |||||||| | | |||||||||||
Sbjct 68863 AGATTGCTGACCGACCAAAGCTGTCATCTGAGAAATATTGATGGTAGAACCCTTGGAGCC 68804
>seq868
Length=196860
Score = 114 bits (126), Expect = 4e-20
Identities = 334/511 (65%), Gaps = 4/511 (1%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||| || || || ||||| | |||||||| | | ||||||||| |||||| | |
Sbjct 110514 TTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTCTA 110455
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|| ||| ||||||||||| ||||| | || ||||| || || ||| ||| | |
Sbjct 110454 CATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 110395
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| |||||| || ||| | || ||||||||| | | || || || || || ||||
Sbjct 110394 TCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACG 110335
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAAT 133676
| || || || | ||||| | || |||||||| |||||| | | ||| | |
Sbjct 110334 AGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACT 110275
Query 133677 TAGAGCGACCACTCAA--AAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAAT 133734
| || | | | ||| || || || | |||| |||||| || || ||||| ||
Sbjct 110274 T-GAACCATCGTCCAAGCAAGCAAGCAG-TCCAAGACGTTATTACCGAGGCTGTTGAGAT 110217
Query 133735 TGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCT 133794
||| || || | | | |||||| || || | | | || ||||| | || |
Sbjct 110216 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 110157
Query 133795 GATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAA 133854
|||| ||| || ||||| || || ||||| | || | | | ||| || ||
Sbjct 110156 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 110097
Query 133855 GATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGAC 133914
| |||| |||||||| ||||| |||| ||||||| ||| | ||| ||||||
Sbjct 110096 GTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAGAC 110037
Query 133915 TAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945
|| ||||||||| | | || ||||| |||
Sbjct 110036 CAACTTCTTCGAGAAGCGTGTCGCCGACTAC 110006
>seq816
Length=170108
Score = 107 bits (118), Expect = 6e-18
Identities = 382/590 (65%), Gaps = 18/590 (3%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | |||||||||||| || | ||||| ||| | || ||| |
Sbjct 58289 ATTAGTCCACAGATGTCACACACATGGACTCTAAAGGCATCCGATACCTCGAATAATCTC 58348
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| |||| | || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 58349 TCCTTCAAGAAGGACGCCGCTCCGTGCGAAATCATACAATCACGCTCCATTTCTCCGAAA 58408
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||||||||| | || | ||| || ||||||| | || ||| | | |||
Sbjct 58409 CGCAGACCACCATCTCTGGCACGACCTTCTACAGGCTGTCTGGTCAGAATCTGAACGGGA 58468
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
|| ||| || ||| ||| || | |||||||| ||||| || || | |
Sbjct 58469 CCTCTGGCTCGCGCATGGATCTTGTCGTCCACCATATGGCGCAGACGTTGATAATAGGTT 58528
Query 251647 GGACCGATGAAGATGCTCGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACT 251703
||||| | ||||| || | || ||| || | ||||| || | | |||||| |
Sbjct 58529 GGACCAAGGAAGA--CTTG-AGCCATCATCTTTCGCCCAGTGTGACCATGATACATGATC 58585
Query 251704 TCGTTTCCATTAGATTCATAACCAAGTTTC---TGTAGCTCTGAAGCAATATCACCAATC 251760
||| ||| ||| | ||||||| | | | |||| ||| | |||| ||
Sbjct 58586 TCGAAGCCACGAGAATGATAACCATGAGCCCGGAGAAGCTTCGAAACGGAATCAACA--- 58642
Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCT 251820
||| | | |||| || | || || | || || | || | || || |
Sbjct 58643 GTGACCTCGGTAAAGGGCGTCGCATCACCCTCGAGTCCACGAAGCGTCGAAACCTTACTC 58702
Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880
| | ||| ||| ||||| || ||||||||| |||||||| ||||| ||||||
Sbjct 58703 AGTTGACACTCGATCAAATGGGCAATTGTCATACGAGATGGAATAGCGTGGGGGTTGATG 58762
Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TG 251937
|| | || || | || | |||||| |||||||| ||| | | ||| ||
Sbjct 58763 ATCAAATCCGGCACGATACCCTGGCAAGTGAATGGCATATC---TTCATGACGGTAAGTG 58819
Query 251938 TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| || || || ||||| |||||||| ||||| || |||||||||||
Sbjct 58820 ATACCGATGGTACCCTTCTGTCCGTGGCGAGAGGCAAATTTATCACCAAT 58869
>seq622
Length=89095
Score = 93.3 bits (102), Expect = 1e-13
Identities = 201/293 (69%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 288937 TTAAATCCATCCATACTTGTTAA-AATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995
|||||||| ||||| || | ||| ||| ||||| || || ||| | |||||| |||
Sbjct 13777 TTAAATCCGTCCAT-CTCGGTAAGAATCTGATTGAGAGTGGCTTCTCGTTCATCGTTTCC 13835
Query 288996 ACCTCTTGAATCACCC-GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054
||| | |||| | || | | | | ||| || | ||| || || || || ||||
Sbjct 13836 ACCGCC-GAATGATCCAGCCTTCCCACGAGCTTTTCCGATAGCGTCGATCTCATCGATGA 13894
Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114
| || | ||| || | || | ||| || || | ||||| || | || | || || |
Sbjct 13895 AGATAATACAAGGCGTGTTCTTTCTTGCCATAGTGAATAAATCACGCACCCTCGAAGCAC 13954
Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT-TGAATGAATGTTACATTT 289173
| | ||||||| |||| || || ||||| ||| |||| || |||| ||||| ||| |
Sbjct 13955 CTACACCAACAAACATCTCCACGAATTCGGAACCGGAAACGCTGAA-GAATGGTACTTGA 14013
Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226
| ||| || || ||| | |||||||| || |||||||||||||| || ||
Sbjct 14014 GATTCACCAGCGGTAGCCTTGGCCAGAAGAGTTTTACCTGTTCCAGGAGGACC 14066
>seq676
Length=219656
Score = 84.2 bits (92), Expect = 6e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556
|||| ||| ||||| ||||| || || ||||| |||||||| ||||||| | ||| ||
Sbjct 79989 ATCAGACAGTCACGTTCCATCTCTCCTAAACGGAGACCACCGTCGCGAGAACGACCTTCT 80048
Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616
| |||||||||||||| | | |||||| || || ||| |||||| |
Sbjct 80049 GTTGGCTGACGAGTGAGGATTGCACGGGGACCGCGAGAACGTGAATGCATCTTATCTTGA 80108
Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660
||||| |||||||| ||||||| | || |||| ||||||
Sbjct 80109 ACCATGTGCTTGAGTTTCTGGTAGTAGATAGGTCCGAAGAAGAT 80152
>seq556
Length=155958
Score = 84.2 bits (92), Expect = 6e-11
Identities = 154/223 (69%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 353913 GCGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCC-CGCTGAT 353971
|||||| || |||| |||| || |||||||| ||| |||||| || || |
Sbjct 56528 GCGACCGTCAGCAACGTGCCATTGCTCAGGGCAGAGCGCACCGACGAATTCTTCGTTG-T 56586
Query 353972 GAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCG 354031
|||| || || || ||||| || ||| ||| || || ||| | ||||| |
Sbjct 56587 GAGAAATCATGATAACACCTCCCTTGTAGTCACGAATAGCGACAGCAAGACCTCCAAGAG 56646
Query 354032 AGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACA 354091
| ||||| || | |||||| ||||||||||| |||| |||| || || | ||||||
Sbjct 56647 AATCACGATCTAAGAAATTGGTAGGTTCGTCGAGGACGAGAAGATGGGGGTTGTTCCACA 56706
Query 354092 TTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
| || | || || || |||||||| |||||||| || || ||
Sbjct 56707 TAGCACCTGCGAGGACAACCTTAACTTTCTGTCCACCGGAAAG 56749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471777433177810
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