Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq622 123 3e-22 seq868 102 1e-15 >seq622 Length=89095 Score = 123 bits (136), Expect = 3e-22 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| ||||||||||| || || || |||| |||||| |||| || ||||||| Sbjct 80487 CCAACTACCTGGACATCAAGCCCCTCCTTGACGTTGGCTGCAAGACTGTCGCGAACATGA 80546 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| || ||||||||||| |||||||| ||||| Sbjct 80547 TCAAGGGCAAGTCACCAGAGGAGATCCGAAAGACCTTCAACAT 80589 >seq868 Length=196860 Score = 102 bits (112), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||| | || ||| |||||| ||||||||||| || | || ||||| |||||| Sbjct 110006 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCAT 110065 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | || ||||||| | |||||| | ||| ||| ||||| | |||||| || Sbjct 110066 AAAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAGGAGCAGACG 110125 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || ||||| ||||| ||||| || ||| | | ||||||||||||| || || Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 110185 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || | || ||| ||||||| ||||||||| || |||||| Sbjct 110186 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCG 110231 Score = 89.7 bits (98), Expect = 6e-12 Identities = 138/194 (71%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||| | |||||| |||| || || ||||| || || ||||| Sbjct 110312 ACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGACCACGCTT 110371 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| | ||| || || | | ||| || ||||| ||||| ||||| || |||||||| Sbjct 110372 CTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAGCGGCAAA 110431 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC-CTTGTTGATCCACTTCATCGCCC 869357 | | | ||| |||| || || ||| ||| || | |||| |||||| | | |||| Sbjct 110432 GGCAACGAGACGCTGAGCGAA--TGTAGAGTCCTTGTCTTG--GATCCATCTTACGGCCC 110487 Query 869358 AGTCGGCCTTTTTC 869371 |||||||||| ||| Sbjct 110488 AGTCGGCCTTCTTC 110501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106964402225210