Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq622 123 3e-22
seq868 102 1e-15
>seq622
Length=89095
Score = 123 bits (136), Expect = 3e-22
Identities = 89/103 (86%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| ||||||||||| || || || |||| |||||| |||| || |||||||
Sbjct 80487 CCAACTACCTGGACATCAAGCCCCTCCTTGACGTTGGCTGCAAGACTGTCGCGAACATGA 80546
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 80547 TCAAGGGCAAGTCACCAGAGGAGATCCGAAAGACCTTCAACAT 80589
>seq868
Length=196860
Score = 102 bits (112), Expect = 1e-15
Identities = 158/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758
||| ||| | || ||| |||||| ||||||||||| || | || ||||| ||||||
Sbjct 110006 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCAT 110065
Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818
| || ||||||| | |||||| | ||| ||| ||||| | |||||| ||
Sbjct 110066 AAAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAGGAGCAGACG 110125
Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878
|| ||||| ||||| ||||| || ||| | | ||||||||||||| || ||
Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 110185
Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924
|| || | || ||| ||||||| ||||||||| || ||||||
Sbjct 110186 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCG 110231
Score = 89.7 bits (98), Expect = 6e-12
Identities = 138/194 (71%), Gaps = 5/194 (3%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||||||||| || ||| | |||||| |||| || || ||||| || || |||||
Sbjct 110312 ACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGACCACGCTT 110371
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||| | ||| || || | | ||| || ||||| ||||| ||||| || ||||||||
Sbjct 110372 CTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAGCGGCAAA 110431
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC-CTTGTTGATCCACTTCATCGCCC 869357
| | | ||| |||| || || ||| ||| || | |||| |||||| | | ||||
Sbjct 110432 GGCAACGAGACGCTGAGCGAA--TGTAGAGTCCTTGTCTTG--GATCCATCTTACGGCCC 110487
Query 869358 AGTCGGCCTTTTTC 869371
|||||||||| |||
Sbjct 110488 AGTCGGCCTTCTTC 110501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106964402225210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |