Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1094 214 2e-50 seq762 120 3e-22 seq1384 111 1e-19 >seq1094 Length=98106 Score = 214 bits (236), Expect = 2e-50 Identities = 987/1537 (64%), Gaps = 68/1537 (4%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | ||| || |||||||| ||||| || || || ||| |||||| ||| | || Sbjct 30264 GTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGG 30205 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || | |||||| || || || ||| || | || || ||||| || || Sbjct 30204 CTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAAC 30145 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 | | | || || | |||||| |||||||| ||| ||| | | | ||||||||| Sbjct 30144 GAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCA 30085 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCA---AACTTGCGGG 138737 | |||| ||||| | |||||||||||||| || | | ||| || || || Sbjct 30084 AAGATCGGTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGA 30025 Query 138738 ACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGA 138796 || ||||||| | ||||| |||| || | || | ||| | | || | Sbjct 30024 AC---CTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAA 29968 Query 138797 GCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCT 138856 | ||| | | ||| || || ||| ||||| |||||| | |||||||| || Sbjct 29967 G-GCAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACT 29909 Query 138857 CGTACGGCATGCG--GAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGAC 138914 || | || | || |||| | | ||| | ||||| || || || || || || | | Sbjct 29908 CGAATGGGAGTCGAAGAGC-TAG-GAAGACATCGGCGAGACCCTGGACACCAACAGCAAT 29851 Query 138915 AGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTCG---ATAGGATAATAGTTTACAT 138970 ||| | || || | ||| ||| ||||| || ||| | ||| || ||||| | | Sbjct 29850 AGGTCTGTGACGGAAATT----GCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGT 29795 Query 138971 CGATGATTTTGTTTAAATTTCGCACGACCACCTT--AGTCGTATGCTTTAATCGT-TCAA 139027 ||||||| ||||| || || |||||| |||| || | | | | || | | | || Sbjct 29794 CGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACAT---CGTGAAGCTTCTGAA 29738 Query 139028 AATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGG 139087 | ||||| |||| | || | || |||| || ||| || | || || | Sbjct 29737 AGTCGTAGCTGCCATCATTTTGGTTGACGT--------AAGTTGG-GAGAGCAAGAGAAG 29687 Query 139088 CTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAAT 139147 | | ||| || || || || ||||| || | | |||||| || || || | || | || Sbjct 29686 CCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGAT 29627 Query 139148 TACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGT 139207 | | ||| ||||| | || | ||||| || |||||||| |||||||| |||| Sbjct 29626 TGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGT 29567 Query 139208 AAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCC 139267 | ||||| | || | || || || ||| | ||| | ||| | | | ||| | Sbjct 29566 AGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCA-AAGCTTC 29508 Query 139268 TAG--CTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTT 139321 | | |||| || ||| || | | ||| | ||||||||| || ||||| Sbjct 29507 TGGGCCTTG-ATGGTCTTG-CGACCCTTGCCTTCTGC---CTCGTACTTCTCATAGAGAG 29453 Query 139322 CGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCG 139381 | || ||| |||||||| | |||| |||| || | |||| || || ||||| || | Sbjct 29452 CCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTG 29393 Query 139382 ACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACA 139441 |||| || ||| || || ||| ||||||| ||||| |||||||| | |||| | | Sbjct 29392 TCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGA 29333 Query 139442 GCAAATCGCGCGC-----CTTCTTATCTTCCGAACCCATGTTACGTT-TCATGTTAAGGA 139495 | |||||| || |||| | ||||| || | | || | | | ||||| Sbjct 29332 AGAGATCGCGAGCGCGAACTTCCTCCTTTCCG------TGGTTCTTTCTGAGATCAAGGA 29279 Query 139496 AATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TT 139552 | ||||| || |||||||||||||| || || ||||| || | || || || | Sbjct 29278 ACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTAT 29219 Query 139553 TGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGAC 139612 | ||||| || || || | || | | || ||||| || || | ||| || | | || Sbjct 29218 TTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATAC 29159 Query 139613 CGCTCGCTGTTCCGTTGGTGCTACGGATGGGA-CTGTTGCGAGCTCGGACGTCATGTACA 139671 || | | | ||||| |||| | ||| | || | | || |||| || ||| Sbjct 29158 CGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTG-GCACGGATTCTGTGGACA 29100 Query 139672 TTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTA 139730 || | ||||| || || || ||||| || | | ||| || | | || ||||| Sbjct 29099 TTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTATCGTA 29041 Query 139731 TATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAG 139790 ||||| || ||||| |||| ||| || || |||||||| || ||||| | | | Sbjct 29040 AATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTG 28981 Query 139791 TTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATCA 139849 | |||||||| ||||| || || ||| |||||| || || | ||| | ||||||| Sbjct 28980 TGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTG-CTGGACATCA 28922 Query 139850 ATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCA 139909 | | ||| || ||||| || ||| ||||||| ||||| |||||||||| |||| || Sbjct 28921 AATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCA 28862 Query 139910 TCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCT 139969 | | ||| ||||| |||||||| | | |||||||| || || ||| Sbjct 28861 TGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATCTCT 28802 Query 139970 CTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | || |||||| | |||||||| ||||||||||| Sbjct 28801 CAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATC 28765 >seq762 Length=84765 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || |||||||| ||| | |||| || | || | Sbjct 19812 AAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAAT 19871 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||||| || || || || ||||||||||| |||||||||||||| Sbjct 19872 GTCAAGTCGAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATCTTC 19931 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || || || || ||| | | | |||| ||||| ||||| |||||||| || Sbjct 19932 GCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGGAGTCC 19991 Query 24899 ACACTACACTTGGT 24912 || || |||||||| Sbjct 19992 ACTCTCCACTTGGT 20005 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || || || ||||| || ||| | | Sbjct 20025 ATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 20084 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| ||||| || || || || ||||| || Sbjct 20085 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 20144 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || || || || ||| |||||||| | | | |||| ||||||||| Sbjct 20145 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAAC 20204 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || || |||| Sbjct 20205 ATCCAGAAGGAGTCTACTCTCCATCTGGT 20233 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || |||||||| || ||||| || | | Sbjct 20253 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 20312 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||||| || || || || || || ||||| || Sbjct 20313 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 20372 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || ||| |||||||| | | || || || ||| Sbjct 20373 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAAC 20432 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || |||||||||| | |||||||| Sbjct 20433 ATCCAGAAGGAGTCTACTCTCCATCTGGTGTTGCGTCTTCGCGGAGG 20479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || ||||| || || | | ||||| | || | || || Sbjct 19529 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 19588 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || || ||||| || || ||||||||||| || || || Sbjct 19589 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 19648 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| | | | || ||||| ||||| || |||||||| || || || Sbjct 19649 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCA 19707 >seq1384 Length=59147 Score = 111 bits (122), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 24691 ACTGATTGATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGA 24750 ||||| ||| || | || | ||| | ||||| || ||||| || || ||||| ||||| Sbjct 42669 ACTGACTGAC-CGTTCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGA 42727 Query 24751 AGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAAT 24810 ||||| || |||| || | || | || || |||||||| ||||| || ||||| Sbjct 42728 GGTAGAGTCCTCCGATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAAT 42787 Query 24811 ACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT 24870 || || || || |||||||||||||| || || || ||||| |||||| ||| | Sbjct 42788 TCCCCCTGACCAGCAACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCT 42847 Query 24871 GTCAGATTATAACATTCAAAAGG 24893 || || || ||||||||||||| Sbjct 42848 TTCCGACTACAACATTCAAAAGG 42870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449885621476400