Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq876 129 4e-24 seq301 96.9 3e-14 seq612 87.8 1e-11 >seq876 Length=341431 Score = 129 bits (142), Expect = 4e-24 Identities = 416/638 (65%), Gaps = 6/638 (1%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||||||||| || || || ||||| ||||| | ||| | || | |||| | || Sbjct 132684 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 132625 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | |||| || || || | || |||||||| ||||| ||||| ||||| | ||| Sbjct 132624 TCAAAAATACCCTCCTCGATAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 132565 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || ||||| || || || || |||||||| || |||| ||||| Sbjct 132564 AAGATGAGGACATTACGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCG 132505 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 |||||||| || || || |||| | |||||| ||||| || || || ||||| || Sbjct 132504 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 132445 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480 || ||||| | || || || | || || || || ||||||| ||||| | |||| || Sbjct 132444 GTAGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGT-TGTTGAC 132386 Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540 | ||| | ||||| || || | | |||| || || ||||| || || || Sbjct 132385 AGTTCCTCCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGAT 132326 Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599 | || || | ||||||| || |||| | | || || | ||| || Sbjct 132325 CTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTTC 132267 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCA 282658 |||| | || ||| | || || ||| |||||||| | || || || | || Sbjct 132266 CACCACGGTCAAGAACAGTGAAGGGGAAATGCTTCATATCAGCCTGGAC-CTCAGCATCT 132208 Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718 | | | ||||| | || || ||||| || | ||| ||| |||| || | || Sbjct 132207 GCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCG 132148 Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778 |||| | ||||| |||||||| |||| | | || || |||||||| | || | || Sbjct 132147 ACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTAAAGGCGACGAAGGAA 132088 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816 || |||||||| || || || || || ||||| ||||| Sbjct 132087 GGTGTTGTGCGGTTTCCCTGGTCGTTTGCAATGATTTC 132050 >seq301 Length=99005 Score = 96.9 bits (106), Expect = 3e-14 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| || | || ||||||||||| |||||||||||| | || |||||| Sbjct 67547 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 67606 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| ||| || ||| | |||| |||| ||||| || || | |||| Sbjct 67607 ACCGTCATTACTGGTGACCCGAATTTGTCTCTGGATGAGGTTGGAGTACCCAGAAGTATT 67666 Query 432408 GCG 432410 ||| Sbjct 67667 GCG 67669 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 435113 TCGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTA 435172 |||||| ||| |||| || || |||||||| | ||||||||||| |||||| | | Sbjct 68971 TCGAGG-TCTCACACCTACCGAGTTCTTCTTCCATGCTATGGCTGGTCGAGAAGGTTTGA 69029 Query 435173 TTAATACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGC 435232 | |||| ||| |||| |||||||| ||||| || || ||| | ||||||||| | Sbjct 69030 TCGATACTGCTGTTAAGACTGCTGAGACTGGATACATCCAACGTCGTCTTGTCAAGGCTC 69089 Query 435233 TTGAAGATATTA--AACAAGAATATGATGGTACAGT 435266 | |||||| ||| |||| || ||||||||||| Sbjct 69090 TGGAAGATGTTATGGCCAAG--TACGATGGTACAGT 69123 >seq612 Length=131943 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 ||||| || |||| ||||||||||||||| || || || || | | ||| || |||||| Sbjct 90299 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 90358 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 ||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| ||| Sbjct 90359 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 90418 Query 282461 GTAATAACGGC 282471 || || || || Sbjct 90419 GTGATGACAGC 90429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740525826001380