Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq876 129 4e-24
seq301 96.9 3e-14
seq612 87.8 1e-11
>seq876
Length=341431
Score = 129 bits (142), Expect = 4e-24
Identities = 416/638 (65%), Gaps = 6/638 (1%)
Strand=Plus/Minus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
||||||||||| || || || ||||| ||||| | ||| | || | |||| | ||
Sbjct 132684 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 132625
Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301
| |||| || || || | || |||||||| ||||| ||||| ||||| | |||
Sbjct 132624 TCAAAAATACCCTCCTCGATAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 132565
Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361
|| || || ||||| || || || || |||||||| || |||| |||||
Sbjct 132564 AAGATGAGGACATTACGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCAGCG 132505
Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421
|||||||| || || || |||| | |||||| ||||| || || || ||||| ||
Sbjct 132504 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 132445
Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480
|| ||||| | || || || | || || || || ||||||| ||||| | |||| ||
Sbjct 132444 GTAGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGT-TGTTGAC 132386
Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540
| ||| | ||||| || || | | |||| || || ||||| || || ||
Sbjct 132385 AGTTCCTCCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGAT 132326
Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599
| || || | ||||||| || |||| | | || || | ||| ||
Sbjct 132325 CTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTTC 132267
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCA 282658
|||| | || ||| | || || ||| |||||||| | || || || | ||
Sbjct 132266 CACCACGGTCAAGAACAGTGAAGGGGAAATGCTTCATATCAGCCTGGAC-CTCAGCATCT 132208
Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718
| | | ||||| | || || ||||| || | ||| ||| |||| || | ||
Sbjct 132207 GCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCG 132148
Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778
|||| | ||||| |||||||| |||| | | || || |||||||| | || | ||
Sbjct 132147 ACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTAAAGGCGACGAAGGAA 132088
Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816
|| |||||||| || || || || || ||||| |||||
Sbjct 132087 GGTGTTGTGCGGTTTCCCTGGTCGTTTGCAATGATTTC 132050
>seq301
Length=99005
Score = 96.9 bits (106), Expect = 3e-14
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
||||| ||||||||| || | || ||||||||||| |||||||||||| | || ||||||
Sbjct 67547 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 67606
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| || |||||| ||| || ||| | |||| |||| ||||| || || | ||||
Sbjct 67607 ACCGTCATTACTGGTGACCCGAATTTGTCTCTGGATGAGGTTGGAGTACCCAGAAGTATT 67666
Query 432408 GCG 432410
|||
Sbjct 67667 GCG 67669
Score = 87.8 bits (96), Expect = 1e-11
Identities = 115/156 (74%), Gaps = 5/156 (3%)
Strand=Plus/Plus
Query 435113 TCGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTA 435172
|||||| ||| |||| || || |||||||| | ||||||||||| |||||| | |
Sbjct 68971 TCGAGG-TCTCACACCTACCGAGTTCTTCTTCCATGCTATGGCTGGTCGAGAAGGTTTGA 69029
Query 435173 TTAATACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGC 435232
| |||| ||| |||| |||||||| ||||| || || ||| | ||||||||| |
Sbjct 69030 TCGATACTGCTGTTAAGACTGCTGAGACTGGATACATCCAACGTCGTCTTGTCAAGGCTC 69089
Query 435233 TTGAAGATATTA--AACAAGAATATGATGGTACAGT 435266
| |||||| ||| |||| || |||||||||||
Sbjct 69090 TGGAAGATGTTATGGCCAAG--TACGATGGTACAGT 69123
>seq612
Length=131943
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400
||||| || |||| ||||||||||||||| || || || || | | ||| || ||||||
Sbjct 90299 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 90358
Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460
||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| |||
Sbjct 90359 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 90418
Query 282461 GTAATAACGGC 282471
|| || || ||
Sbjct 90419 GTGATGACAGC 90429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740525826001380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |