Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq762 116 4e-21
seq1094 102 8e-17
seq1384 96.9 3e-15
>seq762
Length=84765
Score = 116 bits (128), Expect = 4e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || || ||||| || || | | | ||||| | |||||| ||
Sbjct 20221 GTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCA-TCCTCCAACTGCTTTCC 20163
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| ||||||| | |||||||||||| ||||| || |||||||| ||||||| |||
Sbjct 20162 AGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTT 20103
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| || || | | || || |||| |||| || || |||||||||||
Sbjct 20102 GACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGT 20043
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 20042 CTTCACGAAAATCTGCAT 20025
Score = 100 bits (110), Expect = 3e-16
Identities = 128/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| || |||||||| | ||| ||| ||||||||||||||||||
Sbjct 19701 GTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACC-GTCCTCGAGCTGCTTGCC 19643
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | |||||||||||||| || ||||| |||||||| |||||| |||
Sbjct 19642 AGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTT 19583
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
|| | || | ||||| | | ||| || |||| |||| ||| ||||||||
Sbjct 19582 GACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 19529
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||| || || || ||||||||| || ||| | | | || ||||| ||||| ||
Sbjct 19993 GTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCA-TCTTCGAGTTGCTTTCC 19935
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | || ||||| |||||||||||||| ||||| || |||||| |||
Sbjct 19934 GGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCTTGGATCTTCGACTT 19875
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | || |||| | || || |||| |||| ||| ||||| || |||||
Sbjct 19874 GACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGT 19815
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 19814 CTTGACGA 19807
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| |||| || ||| | | | ||||| | |||||| ||
Sbjct 20449 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCA-TCCTCCAACTGCTTACC 20391
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| || | |||||||||||| ||||| || ||||| || |||||| |||
Sbjct 20390 AGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATCTTGGACTT 20331
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | | ||| || || | || | || || || |||| |||
Sbjct 20330 GACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGT 20271
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 20270 CTTGACGAAGATCTGCAT 20253
>seq1094
Length=98106
Score = 102 bits (112), Expect = 8e-17
Identities = 603/947 (64%), Gaps = 39/947 (4%)
Strand=Plus/Minus
Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909
||| || || || | ||| || || ||||| | ||| |||||| || ||| ||
Sbjct 29667 CTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACC 29608
Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969
| |||||| ||||| ||||| | |||||| || |||||||| |||||| | || ||
Sbjct 29607 AAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCC 29548
Query 148970 AGTTTCCACCTGCGTTTCCACTATGAA---CCGATGCAGGTCCTGCGCGCGCACTTGCTG 149026
|| || |||| || | ||| | || | || | ||| || |||| ||
Sbjct 29547 GGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGC---TTCTGGGC-----CTTGATG 29496
Query 149027 CTCGTAGCGACCCTC-----CTGC-TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCC 149080
|| | |||||||| |||| ||||| ||| || ||| || | || ||
Sbjct 29495 GTCTT-GCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACC 29437
Query 149081 GTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGC 149140
||| ||| | ||||||||||||| || |||||||| || | ||| || | |
Sbjct 29436 GTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTT 29377
Query 149141 GTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 149200
| || |||||||| || ||||| || | ||| || ||||| | ||| ||||| ||
Sbjct 29376 CTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGC--- 29320
Query 149201 GCAGTCTTCGGCGC--CCATGTTGCGG-CGCAGGTTGAGCACGCTGAATATGTCCGCGTG 149257
|| |||| | || || | | | || | || | || | || |||||
Sbjct 29319 GCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTG 29260
Query 149258 CCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTG 149314
||| ||||| | ||| | ||||| || || |||||| || |||||||| || |
Sbjct 29259 CCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATA 29200
Query 149315 GCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGT 149374
| | ||||||| || ||||| | |||||| |||| || ||| | ||||| ||
Sbjct 29199 TCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGT 29140
Query 149375 AG-AGCTAATGCGA-CTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCG 149432
||| |||| | || | | | || || | | |||| || || | ||||| || ||
Sbjct 29139 GCCAGC-AATGTAAGCTCCAGTG-GCACGGATTCTGTGGACATTCAGACCGATACCTCCA 29082
Query 149433 CCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTC 149491
| | ||| ||||| || || ||| ||| || ||| || || ||||| |||||
Sbjct 29081 GCATTCTTGGAGATCATGGCACAAGTCTT-GAGAGTATCGTAAATACCGTCGATACTGTC 29023
Query 149492 GCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAA 149551
||||||| | || ||||| || | | ||| | | |||||||| || ||
Sbjct 29022 CTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAA 28963
Query 149552 CATGGTGGGGCTGGCGTGTGTAAAATA-TTTCTGGCTCATCATCTCGTACGACTCG--AG 149608
| ||| || ||||||||||| || || |||| ||||| | ||| | |||| ||
Sbjct 28962 GAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGG-ACATCAAATTGTATGTCTCGATAG 28904
Query 149609 CACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGG 149668
||| | || || ||||| || || || || | || || | ||| | ||| || || ||
Sbjct 28903 CACTC--TCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGG 28846
Query 149669 TCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCC 149728
|| || || | ||| | | ||| | ||| | || || |||||| | ||
Sbjct 28845 ACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCC 28786
Query 149729 AAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775
|||||| | ||||| || || || | | | ||||||| | || ||
Sbjct 28785 AAAGTATTGGTAGTTGAAATCCCGATCATAGACAATGGCAGAGTTGA 28739
>seq1384
Length=59147
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||||||||| || ||| | || | || |||||||| || || || || ||||||
Sbjct 42835 TCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGGGGAATTCCCTCCTTG 42776
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | |||| ||| |||| || ||| || |||| ||| |
Sbjct 42775 TCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAGGACTCTACCTCGAGGGTAATT 42716
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651
|| || ||||| |||||||| |||||
Sbjct 42715 GTCTTTCCGGTGAGAGTTTTGACGAA 42690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483407928921200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |