Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq762 116 4e-21 seq1094 102 8e-17 seq1384 96.9 3e-15 >seq762 Length=84765 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || || ||||| || || | | | ||||| | |||||| || Sbjct 20221 GTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCA-TCCTCCAACTGCTTTCC 20163 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| | |||||||||||| ||||| || |||||||| ||||||| ||| Sbjct 20162 AGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTT 20103 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | | || || |||| |||| || || ||||||||||| Sbjct 20102 GACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGT 20043 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 20042 CTTCACGAAAATCTGCAT 20025 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || |||||||| | ||| ||| |||||||||||||||||| Sbjct 19701 GTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACC-GTCCTCGAGCTGCTTGCC 19643 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||||| || ||||| |||||||| |||||| ||| Sbjct 19642 AGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTT 19583 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||| | | ||| || |||| |||| ||| |||||||| Sbjct 19582 GACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 19529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||||||| || ||| | | | || ||||| ||||| || Sbjct 19993 GTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCA-TCTTCGAGTTGCTTTCC 19935 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||| |||||||||||||| ||||| || |||||| ||| Sbjct 19934 GGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCTTGGATCTTCGACTT 19875 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || |||| | || || |||| |||| ||| ||||| || ||||| Sbjct 19874 GACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGT 19815 Query 133643 TTTTACGA 133650 || |||| Sbjct 19814 CTTGACGA 19807 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| | | | ||||| | |||||| || Sbjct 20449 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCA-TCCTCCAACTGCTTACC 20391 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || | |||||||||||| ||||| || ||||| || |||||| ||| Sbjct 20390 AGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATCTTGGACTT 20331 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | || | || || || |||| ||| Sbjct 20330 GACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGT 20271 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 20270 CTTGACGAAGATCTGCAT 20253 >seq1094 Length=98106 Score = 102 bits (112), Expect = 8e-17 Identities = 603/947 (64%), Gaps = 39/947 (4%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| || || || | ||| || || ||||| | ||| |||||| || ||| || Sbjct 29667 CTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACC 29608 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | |||||| ||||| ||||| | |||||| || |||||||| |||||| | || || Sbjct 29607 AAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCC 29548 Query 148970 AGTTTCCACCTGCGTTTCCACTATGAA---CCGATGCAGGTCCTGCGCGCGCACTTGCTG 149026 || || |||| || | ||| | || | || | ||| || |||| || Sbjct 29547 GGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGC---TTCTGGGC-----CTTGATG 29496 Query 149027 CTCGTAGCGACCCTC-----CTGC-TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCC 149080 || | |||||||| |||| ||||| ||| || ||| || | || || Sbjct 29495 GTCTT-GCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACC 29437 Query 149081 GTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGC 149140 ||| ||| | ||||||||||||| || |||||||| || | ||| || | | Sbjct 29436 GTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTT 29377 Query 149141 GTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 149200 | || |||||||| || ||||| || | ||| || ||||| | ||| ||||| || Sbjct 29376 CTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGC--- 29320 Query 149201 GCAGTCTTCGGCGC--CCATGTTGCGG-CGCAGGTTGAGCACGCTGAATATGTCCGCGTG 149257 || |||| | || || | | | || | || | || | || ||||| Sbjct 29319 GCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTG 29260 Query 149258 CCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTG 149314 ||| ||||| | ||| | ||||| || || |||||| || |||||||| || | Sbjct 29259 CCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATA 29200 Query 149315 GCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGT 149374 | | ||||||| || ||||| | |||||| |||| || ||| | ||||| || Sbjct 29199 TCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGT 29140 Query 149375 AG-AGCTAATGCGA-CTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCG 149432 ||| |||| | || | | | || || | | |||| || || | ||||| || || Sbjct 29139 GCCAGC-AATGTAAGCTCCAGTG-GCACGGATTCTGTGGACATTCAGACCGATACCTCCA 29082 Query 149433 CCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTC 149491 | | ||| ||||| || || ||| ||| || ||| || || ||||| ||||| Sbjct 29081 GCATTCTTGGAGATCATGGCACAAGTCTT-GAGAGTATCGTAAATACCGTCGATACTGTC 29023 Query 149492 GCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAA 149551 ||||||| | || ||||| || | | ||| | | |||||||| || || Sbjct 29022 CTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAA 28963 Query 149552 CATGGTGGGGCTGGCGTGTGTAAAATA-TTTCTGGCTCATCATCTCGTACGACTCG--AG 149608 | ||| || ||||||||||| || || |||| ||||| | ||| | |||| || Sbjct 28962 GAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGG-ACATCAAATTGTATGTCTCGATAG 28904 Query 149609 CACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGG 149668 ||| | || || ||||| || || || || | || || | ||| | ||| || || || Sbjct 28903 CACTC--TCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGG 28846 Query 149669 TCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCC 149728 || || || | ||| | | ||| | ||| | || || |||||| | || Sbjct 28845 ACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCC 28786 Query 149729 AAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 |||||| | ||||| || || || | | | ||||||| | || || Sbjct 28785 AAAGTATTGGTAGTTGAAATCCCGATCATAGACAATGGCAGAGTTGA 28739 >seq1384 Length=59147 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || | || |||||||| || || || || |||||| Sbjct 42835 TCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCAGGGGGAATTCCCTCCTTG 42776 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | |||| ||| |||| || ||| || |||| ||| | Sbjct 42775 TCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAGGACTCTACCTCGAGGGTAATT 42716 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || || ||||| |||||||| ||||| Sbjct 42715 GTCTTTCCGGTGAGAGTTTTGACGAA 42690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483407928921200