Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1094 280 2e-70 seq868 84.2 3e-11 >seq1094 Length=98106 Score = 280 bits (310), Expect = 2e-70 Identities = 1143/1777 (64%), Gaps = 37/1777 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || |||||||| | ||| || | | ||||| || |||||||| ||||| |||||| Sbjct 30602 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 30543 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || ||| |||||||| || | ||| | ||||||| || Sbjct 30542 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 30483 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||||||||| || |||||||| || || | ||| || ||||| | | Sbjct 30482 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 30423 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | || | || ||||| | |||||| ||| |||||||| | |||| Sbjct 30422 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 30363 Query 68614 CTCGT---ATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | |||||| ||||| || ||||||| || || ||||| || | ||| | Sbjct 30362 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 30303 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | || | | | | | | || ||||| | ||| ||||| ||| Sbjct 30302 CAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGACTTGGAATTCACCA 30243 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | || || | || | ||| || || || ||||| || | | | || || || Sbjct 30242 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 30183 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 || |||||| || |||||||||||||| || || | ||||| || | |||||| Sbjct 30182 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 30123 Query 68851 TG-TGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 || || | |||||| | ||| || || ||| ||||||||||| | ||| ||| | Sbjct 30122 TGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCGGTAGGTGTAACCT 30065 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 |||| | ||||||||| || ||| | || || || | ||||| || |||| Sbjct 30064 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAG 30005 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGA 69028 || | ||| | || || ||| | || || ||| ||| || || || |||| Sbjct 30004 TACCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAAGGCAGCGTGGTAGATGGTCTCGA 29945 Query 69029 AAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA-ATA 69087 | |||| ||||||||| || || || || |||||||| | | || || | Sbjct 29944 AGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGGG-AGTCGAAGAGCTAGG 29886 Query 69088 AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT 69147 || |||| || | ||||| || |||| | | |||||||| || | ||| | ||| Sbjct 29885 AAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCTT 29827 Query 69148 TCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT-AAGAT-TTCGGACT 69204 | || || |||| ||| || || || || || || || || || ||| | ||| || Sbjct 29826 GCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC--ACG 29769 Query 69205 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC--TATAACAAACA 69262 || || | || || | || || |||| || | | ||||| | | || Sbjct 29768 ACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACG 29709 Query 69263 TA--TTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA--- 69315 || || || || | ||| || | |||||||| || ||||| | || |||| Sbjct 29708 TAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGG---TGCACAG 29652 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 |||| | ||||||||| || ||||| | ||| || || || || | ||||||| Sbjct 29651 TATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTA 29592 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 |||||| ||| || || |||||||| || || || || | || || || | || | Sbjct 29591 CTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCC 29532 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT 69495 |||| || || | ||||| | || || || ||||||| || ||| ||| | Sbjct 29531 TCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGAT---GGTCTTGCGACCCTTGCCTTCT 29475 Query 69496 ---TCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAG 69550 || || || | || | |||| || ||||| || || |||||||| | | || | Sbjct 29474 GCCTCGTACTTCTCATAGAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCGG 29417 Query 69551 GACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATA 69610 | || || || || ||||||| || ||| | ||| | || ||| || ||||| || | Sbjct 29416 GGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGA 29357 Query 69611 GATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 |||| |||||||| ||||| |||||||| | | | | ||| || ||||| | Sbjct 29356 GATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGT 29297 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 | ||| | ||||| || ||||| | | ||||| |||||||| || || || ||||| | Sbjct 29296 TCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGA 29237 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | || || || |||||||| ||||| || | |||||||| ||||| || | |||| Sbjct 29236 AAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTC 29177 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 ||||| |||| |||||| || || || || ||||| |||| ||| ||| ||| | | Sbjct 29176 GGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGG 29117 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | || || | | | ||||| || ||||| || | || ||||| | |||||| Sbjct 29116 CACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAG 29057 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970 || | || || || ||||| || || || || || |||||| | | || || Sbjct 29056 TCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATG 28997 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 ||| | ||| ||| || || || ||| | || ||||| ||||| || || Sbjct 28996 AAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGT 28937 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTC 70090 | || || | || ||||||||| || ||||| || ||||| | ||||| | Sbjct 28936 ACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATAC 28877 Query 70091 CTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 | | || || | ||| | ||| || || || ||||| Sbjct 28876 CGACAGCCACTCTCATGATCATGTGTTGTGGACGTTC 28840 >seq868 Length=196860 Score = 84.2 bits (92), Expect = 3e-11 Identities = 173/257 (67%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || |||||||| || ||| || || || ||||| || || | || |||| | Sbjct 110642 TCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 110701 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || |||||| | |||| ||| | || || || || ||||| ||| || || Sbjct 110702 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTAACAATTCCGTCAGATGCAGCG 110761 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090 || ||||| | || || | ||| ||| | |||||| | | | || |||||| Sbjct 110762 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 110821 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | || ||| || || | ||| | |||||| || ||||| || || ||||||||||| Sbjct 110822 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 110881 Query 40151 TTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 110882 TTGTACATCTGCCAGAT 110898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686890511053200