Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq762 123 2e-23
seq1094 104 2e-17
>seq762
Length=84765
Score = 123 bits (136), Expect = 2e-23
Identities = 169/235 (72%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073
|||||| |||||||| | ||||| |||| ||| | ||||| || || || || |||||
Sbjct 20486 TTATTGACCTCCGCGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 20427
Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133
|||||||| |||| | || || | ||| ||||| || |||| || | ||| || ||
Sbjct 20426 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTC 20367
Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193
|| || | |||||| ||||| ||||||| || | | | || | ||||| | |
Sbjct 20366 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGA 20307
Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|||||||| ||||| |||| || || |||| ||| || || ||||| ||||||
Sbjct 20306 CTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 20252
>seq1094
Length=98106
Score = 104 bits (114), Expect = 2e-17
Identities = 318/484 (66%), Gaps = 11/484 (2%)
Strand=Plus/Minus
Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661
||| || ||| |||| ||||| || | ||| || |||| ||||| |||||||| ||
Sbjct 29418 GGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAA 29359
Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT--TTCTCTTCTGTACCC 131719
| ||| || | ||||| ||||| || ||||| | ||| ||| || || | ||
Sbjct 29358 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTC-CTCCTTT--CC 29302
Query 131720 ATAAtttttt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACAC 131778
| || ||| | | || | || || || | || || ||||| || || | || |
Sbjct 29301 GTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGAT 29242
Query 131779 TGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835
|| | || || ||||||| || || || | ||||| | | |||||||| |
Sbjct 29241 CGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAA 29182
Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA-GCTGC 131894
|| || | ||| || | | |||||||| ||| || || |||| |||||| ||| |
Sbjct 29181 AACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCT-C 29123
Query 131895 CATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTG 131954
|| |||| | |||| |||| || || || || |||||||| | | || ||||| | |
Sbjct 29122 CAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGG 29063
Query 131955 CGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAA 132014
| || | | ||||| | || ||||| || | |||||| | ||||||| || |
Sbjct 29062 CACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 29003
Query 132015 AGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTG 132074
|||| || || | ||| || ||||||||| | ||| | || || |||||||
Sbjct 29002 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 28943
Query 132075 TAAA 132078
||||
Sbjct 28942 TAAA 28939
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/221 (69%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 130754 TTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGT 130813
|||| || ||| || |||||||||| ||| |||| ||| |||||| ||| | ||
Sbjct 30263 TTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGC 30204
Query 130814 TCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACT 130873
|| || | |||||| ||| | ||||| ||| | || || ||||| || ||
Sbjct 30203 TCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACG 30144
Query 130874 AATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCAT 130933
| | | ||||||||||||||| | |||||| | ||||||| |||| |||||
Sbjct 30143 AGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCAA 30084
Query 130934 AGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974
||| ||||||| | || ||||||||||| |||| ||
Sbjct 30083 AGATCGGTAGGTGTAAC---CTTCCACATATCGTATTGGAG 30046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424923368968560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |