Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq762 123 2e-23 seq1094 104 2e-17 >seq762 Length=84765 Score = 123 bits (136), Expect = 2e-23 Identities = 169/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| |||||||| | ||||| |||| ||| | ||||| || || || || ||||| Sbjct 20486 TTATTGACCTCCGCGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 20427 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 |||||||| |||| | || || | ||| ||||| || |||| || | ||| || || Sbjct 20426 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTC 20367 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | |||||| ||||| ||||||| || | | | || | ||||| | | Sbjct 20366 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGA 20307 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||||| ||||| |||| || || |||| ||| || || ||||| |||||| Sbjct 20306 CTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 20252 >seq1094 Length=98106 Score = 104 bits (114), Expect = 2e-17 Identities = 318/484 (66%), Gaps = 11/484 (2%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || ||| |||| ||||| || | ||| || |||| ||||| |||||||| || Sbjct 29418 GGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAA 29359 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT--TTCTCTTCTGTACCC 131719 | ||| || | ||||| ||||| || ||||| | ||| ||| || || | || Sbjct 29358 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTC-CTCCTTT--CC 29302 Query 131720 ATAAtttttt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACAC 131778 | || ||| | | || | || || || | || || ||||| || || | || | Sbjct 29301 GTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGAT 29242 Query 131779 TGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835 || | || || ||||||| || || || | ||||| | | |||||||| | Sbjct 29241 CGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAA 29182 Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA-GCTGC 131894 || || | ||| || | | |||||||| ||| || || |||| |||||| ||| | Sbjct 29181 AACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCT-C 29123 Query 131895 CATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTG 131954 || |||| | |||| |||| || || || || |||||||| | | || ||||| | | Sbjct 29122 CAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGG 29063 Query 131955 CGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAA 132014 | || | | ||||| | || ||||| || | |||||| | ||||||| || | Sbjct 29062 CACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 29003 Query 132015 AGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTG 132074 |||| || || | ||| || ||||||||| | ||| | || || ||||||| Sbjct 29002 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 28943 Query 132075 TAAA 132078 |||| Sbjct 28942 TAAA 28939 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 130754 TTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGT 130813 |||| || ||| || |||||||||| ||| |||| ||| |||||| ||| | || Sbjct 30263 TTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGC 30204 Query 130814 TCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACT 130873 || || | |||||| ||| | ||||| ||| | || || ||||| || || Sbjct 30203 TCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACG 30144 Query 130874 AATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCAT 130933 | | | ||||||||||||||| | |||||| | ||||||| |||| ||||| Sbjct 30143 AGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCAA 30084 Query 130934 AGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974 ||| ||||||| | || ||||||||||| |||| || Sbjct 30083 AGATCGGTAGGTGTAAC---CTTCCACATATCGTATTGGAG 30046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424923368968560