Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 304 2e-77
seq868 158 2e-33
>seq1094
Length=98106
Score = 304 bits (336), Expect = 2e-77
Identities = 1167/1807 (65%), Gaps = 37/1807 (2%)
Strand=Plus/Minus
Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422
||||| |||||||| |||||||| || || ||||| | | |||||| | |
Sbjct 30569 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 30510
Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482
| |||| ||| |||||| | |||| || |||||| ||| ||||| ||||||
Sbjct 30509 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 30450
Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCA-TCTTA-ATTTCCCAAACTGTGC 110540
|| || | || ||||| | || || | | | | | || ||||| || ||
Sbjct 30449 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACGCTGGGAGATCTCCCAGACAGTCT 30392
Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600
|| ||| ||||||||| | || |||| | || ||| ||||||||||| || |
Sbjct 30391 TGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCGG 30332
Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660
| || | | |||||| | | ||||||||||| || | || || || | |
Sbjct 30331 CGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAATA 30272
Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720
||| || | || ||||| || | | | || ||||||||| | ||
Sbjct 30271 ACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATG 30212
Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780
||||||| || || || || || || | |||||| ||| ||| |||||||| |
Sbjct 30211 TGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAG 30152
Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCC 110840
| || | | | ||||||||||||||| | || |||||| ||| ||| | |||
Sbjct 30151 GAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCC 30092
Query 110841 AGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGA 110898
|||| | || | | ||| | ||||||| |||| || | || ||| | ||||| ||
Sbjct 30091 AGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGA 30034
Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG-GCTTCAGCCAATTCA-CAGCTC 110956
|| || ||||| || | || || || | ||| || |||| || | ||| ||| |
Sbjct 30033 AGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGATG 29975
Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016
|| ||| | ||||| || ||||| || ||||| | ||| | | ||||| ||
Sbjct 29974 AAGTCAAGGCA-GCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCG 29916
Query 111017 TCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAA 111075
|| || |||| | || | | | | || ||||| |||||||| || ||||| |
Sbjct 29915 GGAGACTCGAATGGG-AGTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAAC 29857
Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATT 111132
| ||||||||||||| || | ||| ||| || || ||| ||| || || | ||
Sbjct 29856 AGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGTAGTT 29800
Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192
|||| |||| ||| | || || |||| || || || ||||| || |
Sbjct 29799 GATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTG 29740
Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252
| | || | ||| | | || ||||| || |||| || || | || ||||| ||
Sbjct 29739 AAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTT 29680
Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312
|||||||| ||| || | ||| || | || ||||| || | ||||| ||
Sbjct 29679 ACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCT 29620
Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372
|| || || | ||||| || |||||||| |||||| |||||||||||||||||
Sbjct 29619 GCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCAT 29560
Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431
| | || | || ||||| || || | | ||| || | | ||||| | || | | ||
Sbjct 29559 GAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTT 29500
Query 111432 GTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488
| |||| ||| ||| | ||| | ||||||||||| ||||| || ||||| |
Sbjct 29499 G----ATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATT 29444
Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548
| ||||| | || | ||||| || || || || || | || | |||| ||
Sbjct 29443 CGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTAC 29384
Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608
|| | |||||| ||||||||||| || ||||||||||| || | | |||||||| |
Sbjct 29383 CATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGC 29324
Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668
| ||| | || || | || ||||| || | ||||||||||| | || ||| |
Sbjct 29323 GAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAG 29264
Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTA 111725
||||||||||||| || |||| |||| || || || | ||| | || | |
Sbjct 29263 CGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAA 29204
Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785
|||| | |||||| ||| || || || ||||| |||| |||||| | || | || |
Sbjct 29203 CATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGT 29144
Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845
|||| || ||| || | | |||| | | |||| | || || ||||| |
Sbjct 29143 TTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTC 29084
Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905
|||| ||| ||||| ||||| | | ||||| | || ||||||| ||| ||
Sbjct 29083 CAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGT 29024
Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965
||||||| || |||| | |||||| || | || | | |||||| || || |
Sbjct 29023 CCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAA 28964
Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023
|||||||||| | ||||| || | | |||| ||||||| | ||||||||| |
Sbjct 28963 AGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGAT 28906
Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
|| ||||| || |||||||| || |||| || || | ||||| ||||| |||||
Sbjct 28905 AGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGG 28846
Query 112084 GGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGAC 112142
||| | |||| ||||| || |||| || | || ||||||| || |||| |
Sbjct 28845 ACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATC-TCTCAAGAGTCTTGAATC 28787
Query 112143 CAAAGTA 112149
|||||||
Sbjct 28786 CAAAGTA 28780
>seq868
Length=196860
Score = 158 bits (174), Expect = 2e-33
Identities = 347/512 (68%), Gaps = 6/512 (1%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| |||| |||||||| |||||||||||||| || ||||| ||||| ||||||
Sbjct 110007 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATA 110066
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGACG 122489
||||||||||| || | || || | | | || | | ||| |||||
Sbjct 110067 AAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 110125
Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549
||| | || |||||||||| | |||| ||| |||||| |||| || |||
Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 110185
Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609
|| || || || | |||| ||| ||| |||||||| ||||| | | | | | ||
Sbjct 110186 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 110245
Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCT 122668
|| | || | | || | || ||| ||| | | || |||||| ||
Sbjct 110246 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 110304
Query 122669 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGAC 122728
||||||||| || || ||||| || || || || |||||| ||||||||||| ||||
Sbjct 110305 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 110364
Query 122729 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788
| |||||||||||||| | |||| | |||||| |||||||||||||||||||| |||
Sbjct 110365 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 110424
Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATT 122847
||||| |||| || || | ||||| | ||| | ||| | | | |||| | |
Sbjct 110425 CGGCAAAGGCAACGAGACGCTGAGCGAATG-TAGAGTCCTTGTCTTGGATCCATCTTACG 110483
Query 122848 GCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879
||||| | |||||||||| || || || ||
Sbjct 110484 GCCCAGTCGGCCTTCTTCTTGATGCAGGGAAC 110515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628015278648000
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