Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1094 304 2e-77 seq868 158 2e-33 >seq1094 Length=98106 Score = 304 bits (336), Expect = 2e-77 Identities = 1167/1807 (65%), Gaps = 37/1807 (2%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| |||||||| || || ||||| | | |||||| | | Sbjct 30569 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 30510 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | |||| ||| |||||| | |||| || |||||| ||| ||||| |||||| Sbjct 30509 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 30450 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCA-TCTTA-ATTTCCCAAACTGTGC 110540 || || | || ||||| | || || | | | | | || ||||| || || Sbjct 30449 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACGCTGGGAGATCTCCCAGACAGTCT 30392 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 || ||| ||||||||| | || |||| | || ||| ||||||||||| || | Sbjct 30391 TGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCGG 30332 Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGA 110660 | || | | |||||| | | ||||||||||| || | || || || | | Sbjct 30331 CGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAATA 30272 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 ||| || | || ||||| || | | | || ||||||||| | || Sbjct 30271 ACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATG 30212 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780 ||||||| || || || || || || | |||||| ||| ||| |||||||| | Sbjct 30211 TGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAG 30152 Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCC 110840 | || | | | ||||||||||||||| | || |||||| ||| ||| | ||| Sbjct 30151 GAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCC 30092 Query 110841 AGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGA 110898 |||| | || | | ||| | ||||||| |||| || | || ||| | ||||| || Sbjct 30091 AGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGA 30034 Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG-GCTTCAGCCAATTCA-CAGCTC 110956 || || ||||| || | || || || | ||| || |||| || | ||| ||| | Sbjct 30033 AGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGATG 29975 Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016 || ||| | ||||| || ||||| || ||||| | ||| | | ||||| || Sbjct 29974 AAGTCAAGGCA-GCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCG 29916 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAA 111075 || || |||| | || | | | | || ||||| |||||||| || ||||| | Sbjct 29915 GGAGACTCGAATGGG-AGTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAAC 29857 Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATT 111132 | ||||||||||||| || | ||| ||| || || ||| ||| || || | || Sbjct 29856 AGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGTAGTT 29800 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 |||| |||| ||| | || || |||| || || || ||||| || | Sbjct 29799 GATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTG 29740 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | | || | ||| | | || ||||| || |||| || || | || ||||| || Sbjct 29739 AAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTT 29680 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 |||||||| ||| || | ||| || | || ||||| || | ||||| || Sbjct 29679 ACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCT 29620 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || | ||||| || |||||||| |||||| ||||||||||||||||| Sbjct 29619 GCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCAT 29560 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431 | | || | || ||||| || || | | ||| || | | ||||| | || | | || Sbjct 29559 GAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTT 29500 Query 111432 GTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 | |||| ||| ||| | ||| | ||||||||||| ||||| || ||||| | Sbjct 29499 G----ATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATT 29444 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548 | ||||| | || | ||||| || || || || || | || | |||| || Sbjct 29443 CGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTAC 29384 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 || | |||||| ||||||||||| || ||||||||||| || | | |||||||| | Sbjct 29383 CATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGC 29324 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668 | ||| | || || | || ||||| || | ||||||||||| | || ||| | Sbjct 29323 GAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAG 29264 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTA 111725 ||||||||||||| || |||| |||| || || || | ||| | || | | Sbjct 29263 CGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAA 29204 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| | |||||| ||| || || || ||||| |||| |||||| | || | || | Sbjct 29203 CATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGT 29144 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 |||| || ||| || | | |||| | | |||| | || || ||||| | Sbjct 29143 TTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTC 29084 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 |||| ||| ||||| ||||| | | ||||| | || ||||||| ||| || Sbjct 29083 CAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGT 29024 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 ||||||| || |||| | |||||| || | || | | |||||| || || | Sbjct 29023 CCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAA 28964 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023 |||||||||| | ||||| || | | |||| ||||||| | ||||||||| | Sbjct 28963 AGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGAT 28906 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || ||||| || |||||||| || |||| || || | ||||| ||||| ||||| Sbjct 28905 AGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGG 28846 Query 112084 GGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGAC 112142 ||| | |||| ||||| || |||| || | || ||||||| || |||| | Sbjct 28845 ACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATC-TCTCAAGAGTCTTGAATC 28787 Query 112143 CAAAGTA 112149 ||||||| Sbjct 28786 CAAAGTA 28780 >seq868 Length=196860 Score = 158 bits (174), Expect = 2e-33 Identities = 347/512 (68%), Gaps = 6/512 (1%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| |||| |||||||| |||||||||||||| || ||||| ||||| |||||| Sbjct 110007 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATA 110066 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGACG 122489 ||||||||||| || | || || | | | || | | ||| ||||| Sbjct 110067 AAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 110125 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 ||| | || |||||||||| | |||| ||| |||||| |||| || ||| Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 110185 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || || || | |||| ||| ||| |||||||| ||||| | | | | | || Sbjct 110186 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 110245 Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCT 122668 || | || | | || | || ||| ||| | | || |||||| || Sbjct 110246 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 110304 Query 122669 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGAC 122728 ||||||||| || || ||||| || || || || |||||| ||||||||||| |||| Sbjct 110305 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 110364 Query 122729 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 | |||||||||||||| | |||| | |||||| |||||||||||||||||||| ||| Sbjct 110365 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 110424 Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATT 122847 ||||| |||| || || | ||||| | ||| | ||| | | | |||| | | Sbjct 110425 CGGCAAAGGCAACGAGACGCTGAGCGAATG-TAGAGTCCTTGTCTTGGATCCATCTTACG 110483 Query 122848 GCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 ||||| | |||||||||| || || || || Sbjct 110484 GCCCAGTCGGCCTTCTTCTTGATGCAGGGAAC 110515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628015278648000