Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 244 1e-59
seq868 163 4e-35
seq622 82.4 9e-11
>seq1094
Length=98106
Score = 244 bits (270), Expect = 1e-59
Identities = 1114/1745 (64%), Gaps = 45/1745 (3%)
Strand=Plus/Minus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|||||||||||||| || ||||| || ||| ||||||| || | ||||| |
Sbjct 30569 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 30510
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | |||||| | |||| || |||||| |||||| || |||||||||
Sbjct 30509 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 30450
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013
|| ||||| || ||||| | || | | | | || | || ||||| ||||||
Sbjct 30449 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 30393
Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073
|||| || ||| ||||| | || |||| || |||||||||||| || || |
Sbjct 30392 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCG 30333
Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133
|| || | | |||||| | | |||||||||||| || | ||||||| ||
Sbjct 30332 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAT 30273
Query 118134 AG---ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190
| | | ||| || || || ||||| || | | |||| ||||| |||
Sbjct 30272 AACCAAGGGTTA---ACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTG 30216
Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250
| ||||||||||| || ||||| ||| || | |||||| || ||| || |||
Sbjct 30215 GATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGC 30156
Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310
|| || || | ||| | |||||||| ||||| | | | | || ||| ||| | | |
Sbjct 30155 ATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTG 30096
Query 118311 TCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368
||||||| | || | | || | || | ||||||||| | ||||| ||||
Sbjct 30095 GCCCAGTCCCAAA-GATCGGTAGGTGTAACCTT-CCACATATCGTATTGGAGCTCTCCTT 30038
Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG-AG 118427
| || ||||| || || || ||||||| || | || | || || | || ||
Sbjct 30037 GTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAG 29978
Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487
| || ||| | ||||| || || || || || || | ||| | ||||||
Sbjct 29977 ATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCC 29919
Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATA--AATACATCCGCGAGACCTTGGACAC 118545
||| || || || | |||||| | | || || ||||| |||||||| |||||||
Sbjct 29918 TCGGGAGACTCGAATGGGAGTCG--AAGAGCTAGGAAGACATCGGCGAGACCCTGGACAC 29861
Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAA 118602
| | |||| || | || | | ||| ||| || || ||| || || ||
Sbjct 29860 CAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGT 29804
Query 118603 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662
| || | ||||| | | | || | || || |||||||| || || |||||||
Sbjct 29803 AGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCT 29744
Query 118663 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 118722
| | | || | |||| | | || ||||| || | || || || | || ||||
Sbjct 29743 TCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCA 29684
Query 118723 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTG 118782
||||| |||| | ||| || || ||| || | || || ||||| | || |
Sbjct 29683 AGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGG 29624
Query 118783 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 118842
| || ||||| || | |||||| ||||| |||| ||| || ||||||||||| |
Sbjct 29623 AGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGA 29564
Query 118843 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCA 118901
||||| | || | || ||||| ||||| | || ||| || | | ||| | | || |
Sbjct 29563 GCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGG 29504
Query 118902 GCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958
|| | ||| ||| | | || ||| |||||||||| ||||| || |||
Sbjct 29503 CCTTGA----TGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCA 29448
Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018
|| || ||||| | || | || || || || | ||||| | || | ||||
Sbjct 29447 AATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCAT 29388
Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078
|||| || |||||| |||||||||||||| ||||| ||||| || || ||||||||
Sbjct 29387 GTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGA 29328
Query 119079 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 119138
|| ||| |||| |||| || | || || || | | || | || || | || |
Sbjct 29327 TCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACA 29268
Query 119139 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGG 119195
|| |||||||| || || ||||| | ||||| | || || | ||| |||||
Sbjct 29267 TCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGG 29208
Query 119196 TTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGG 119255
| ||||| || || ||| ||| || || || ||||| |||| ||||| | ||| |
Sbjct 29207 TCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTC 29148
Query 119256 CCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATA 119315
|| ||||| || ||| || | |||| | || ||||| | || ||| |||
Sbjct 29147 CCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATA 29088
Query 119316 CCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 119375
|| || || ||| ||||| || || | ||||| | |||| || || |||||
Sbjct 29087 CCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATA 29028
Query 119376 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGC 119434
||| |||| | |||| | |||||| || | ||| || || ||||| || ||
Sbjct 29027 CTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTG-TGCTTGTGGTGTGCCGGC 28969
Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTC 119492
| ||||| ||||| | |||||| || | | |||| ||||||| | ||| |||
Sbjct 28968 GGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTC 28911
Query 119493 TCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTAT 119552
|| | | ||| || |||||||||||||||| | || | ||| | ||||| |
Sbjct 28910 TCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGT 28851
Query 119553 TGGGG 119557
|| ||
Sbjct 28850 TGTGG 28846
>seq868
Length=196860
Score = 163 bits (180), Expect = 4e-35
Identities = 308/448 (69%), Gaps = 4/448 (1%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| | || ||||||||||||||||| ||||| ||| | | | ||| |||||||||
Sbjct 110007 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATA 110066
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| ||||||||||| || || || | | || | | | | ||| |||||
Sbjct 110067 AAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 110125
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||| | |||| |||||||||| | |||| | | |||||| |||| || |||
Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 110185
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| | | ||| || || ||||| || | | | | ||
Sbjct 110186 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 110245
Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTCCT 130025
| | | | ||| || | || | ||| ||| | | || |||||| ||
Sbjct 110246 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 110304
Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085
||||||||| ||||||||||||||||| || || |||||| ||||||||||| ||||
Sbjct 110305 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 110364
Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145
| ||||||||||||||||| || | ||||| || ||||||||||| ||||| |||
Sbjct 110365 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 110424
Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAA 130173
|| || |||| |||||||| ||| ||
Sbjct 110425 CGGCAAAGGCAACGAGACGCTGAGCGAA 110452
>seq622
Length=89095
Score = 82.4 bits (90), Expect = 9e-11
Identities = 158/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACT 14293
|| |||| ||||| || ||||||||||| | ||||| || || | | || |
Sbjct 13867 TTTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATA 13926
Query 14294 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 14353
|| | ||| ||||| ||| ||||| ||||| |||||||||||||| || | ||
Sbjct 13927 GTGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAA 13986
Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413
||||| || ||| || || | ||||||||| ||| | || ||| || || ||
Sbjct 13987 CCGGAAACGCTGAAGAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 14046
Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466
|| || || || || || | |||| ||||||||| || ||| | |||||
Sbjct 14047 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 14099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618418734162800
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