Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1094 244 1e-59 seq868 163 4e-35 seq622 82.4 9e-11 >seq1094 Length=98106 Score = 244 bits (270), Expect = 1e-59 Identities = 1114/1745 (64%), Gaps = 45/1745 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| || ||||| || ||| ||||||| || | ||||| | Sbjct 30569 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 30510 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | |||||| | |||| || |||||| |||||| || ||||||||| Sbjct 30509 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 30450 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013 || ||||| || ||||| | || | | | | || | || ||||| |||||| Sbjct 30449 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 30393 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| || ||| ||||| | || |||| || |||||||||||| || || | Sbjct 30392 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCG 30333 Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 || || | | |||||| | | |||||||||||| || | ||||||| || Sbjct 30332 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAT 30273 Query 118134 AG---ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | | | ||| || || || ||||| || | | |||| ||||| ||| Sbjct 30272 AACCAAGGGTTA---ACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTG 30216 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||||||||| || ||||| ||| || | |||||| || ||| || ||| Sbjct 30215 GATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGC 30156 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 || || || | ||| | |||||||| ||||| | | | | || ||| ||| | | | Sbjct 30155 ATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTG 30096 Query 118311 TCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||||||| | || | | || | || | ||||||||| | ||||| |||| Sbjct 30095 GCCCAGTCCCAAA-GATCGGTAGGTGTAACCTT-CCACATATCGTATTGGAGCTCTCCTT 30038 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG-AG 118427 | || ||||| || || || ||||||| || | || | || || | || || Sbjct 30037 GTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAG 29978 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 | || ||| | ||||| || || || || || || | ||| | |||||| Sbjct 29977 ATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCC 29919 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATA--AATACATCCGCGAGACCTTGGACAC 118545 ||| || || || | |||||| | | || || ||||| |||||||| ||||||| Sbjct 29918 TCGGGAGACTCGAATGGGAGTCG--AAGAGCTAGGAAGACATCGGCGAGACCCTGGACAC 29861 Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAA 118602 | | |||| || | || | | ||| ||| || || ||| || || || Sbjct 29860 CAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGT 29804 Query 118603 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662 | || | ||||| | | | || | || || |||||||| || || ||||||| Sbjct 29803 AGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCT 29744 Query 118663 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 118722 | | | || | |||| | | || ||||| || | || || || | || |||| Sbjct 29743 TCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCA 29684 Query 118723 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTG 118782 ||||| |||| | ||| || || ||| || | || || ||||| | || | Sbjct 29683 AGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGG 29624 Query 118783 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 118842 | || ||||| || | |||||| ||||| |||| ||| || ||||||||||| | Sbjct 29623 AGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGA 29564 Query 118843 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCA 118901 ||||| | || | || ||||| ||||| | || ||| || | | ||| | | || | Sbjct 29563 GCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGG 29504 Query 118902 GCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958 || | ||| ||| | | || ||| |||||||||| ||||| || ||| Sbjct 29503 CCTTGA----TGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCA 29448 Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018 || || ||||| | || | || || || || | ||||| | || | |||| Sbjct 29447 AATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCAT 29388 Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078 |||| || |||||| |||||||||||||| ||||| ||||| || || |||||||| Sbjct 29387 GTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGA 29328 Query 119079 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 119138 || ||| |||| |||| || | || || || | | || | || || | || | Sbjct 29327 TCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACA 29268 Query 119139 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGG 119195 || |||||||| || || ||||| | ||||| | || || | ||| ||||| Sbjct 29267 TCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGG 29208 Query 119196 TTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGG 119255 | ||||| || || ||| ||| || || || ||||| |||| ||||| | ||| | Sbjct 29207 TCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTC 29148 Query 119256 CCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATA 119315 || ||||| || ||| || | |||| | || ||||| | || ||| ||| Sbjct 29147 CCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATA 29088 Query 119316 CCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 119375 || || || ||| ||||| || || | ||||| | |||| || || ||||| Sbjct 29087 CCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATA 29028 Query 119376 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGC 119434 ||| |||| | |||| | |||||| || | ||| || || ||||| || || Sbjct 29027 CTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTG-TGCTTGTGGTGTGCCGGC 28969 Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTC 119492 | ||||| ||||| | |||||| || | | |||| ||||||| | ||| ||| Sbjct 28968 GGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATCAAATTGTATGTC 28911 Query 119493 TCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTAT 119552 || | | ||| || |||||||||||||||| | || | ||| | ||||| | Sbjct 28910 TCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGT 28851 Query 119553 TGGGG 119557 || || Sbjct 28850 TGTGG 28846 >seq868 Length=196860 Score = 163 bits (180), Expect = 4e-35 Identities = 308/448 (69%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| | || ||||||||||||||||| ||||| ||| | | | ||| ||||||||| Sbjct 110007 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGGGAGATGTTCTCCATA 110066 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||||||||||| || || || | | || | | | | ||| ||||| Sbjct 110067 AAGTCAAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 110125 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||| | |||| | | |||||| |||| || ||| Sbjct 110126 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 110185 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| | | ||| || || ||||| || | | | | || Sbjct 110186 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 110245 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTCCT 130025 | | | | ||| || | || | ||| ||| | | || |||||| || Sbjct 110246 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 110304 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||||||||| ||||||||||||||||| || || |||||| ||||||||||| |||| Sbjct 110305 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 110364 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | ||||||||||||||||| || | ||||| || ||||||||||| ||||| ||| Sbjct 110365 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 110424 Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAA 130173 || || |||| |||||||| ||| || Sbjct 110425 CGGCAAAGGCAACGAGACGCTGAGCGAA 110452 >seq622 Length=89095 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACT 14293 || |||| ||||| || ||||||||||| | ||||| || || | | || | Sbjct 13867 TTTCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATA 13926 Query 14294 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 14353 || | ||| ||||| ||| ||||| ||||| |||||||||||||| || | || Sbjct 13927 GTGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAA 13986 Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 ||||| || ||| || || | ||||||||| ||| | || ||| || || || Sbjct 13987 CCGGAAACGCTGAAGAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 14046 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || || || || | |||| ||||||||| || ||| | ||||| Sbjct 14047 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 14099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618418734162800