Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1094 367 2e-96 seq868 158 1e-33 >seq1094 Length=98106 Score = 367 bits (406), Expect = 2e-96 Identities = 980/1467 (67%), Gaps = 47/1467 (3%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 || ||||| |||| || ||||||| || | || |||| || ||||| || | ||| Sbjct 28780 TACTTTGGATTCAAGACTCTTGAGA-GATCATACCTTCTCCGTCTCGAGGG---CAAGAT 28835 Query 104215 GGA--AACC-CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 | ||| ||||| ||||| ||||| | ||||| |||||||||| ||||| || || Sbjct 28836 TGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATAT 28895 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329 ||| || | ||||||||| | ||||||| |||| | | || ||||| | Sbjct 28896 TGAGAGTGCTATCGAGACATACAATTTGATGTCCAGCAAGTACTTTACA--CACGCGTCT 28953 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||||||||| || || |||||| | | ||| | || |||||| | |||| | Sbjct 28954 CCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGAC 29013 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||| ||| ||||||| || | ||||| | | ||||| ||||| Sbjct 29014 ATGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCC 29073 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 ||| ||||| ||||| || || | |||| | | |||| | | || ||| Sbjct 29074 AAGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATT 29133 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| || | || | |||||| |||| ||||| || || || ||| |||| Sbjct 29134 GCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACA 29193 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || | ||||| | || | ||| | || || || |||| |||| || ||| Sbjct 29194 GCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAG 29253 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 ||||||||||| ||| || | ||||||||||| | | ||||| || | ||||| Sbjct 29254 CCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGAGGAA 29313 Query 104687 G--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | |||| | ||||||||||||| |||||| |||||||||||||||||||||||| | | Sbjct 29314 GTTCGCGCT--CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTG 29371 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 ||||| ||| ||| | ||| | || | || || || || || ||||| | |||| Sbjct 29372 TTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATG 29431 Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG 104864 ||||| || ||||| || || || |||||||||| |||||| | | | | | Sbjct 29432 TTTACGGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGG-CAAGGGTC-G 29489 Query 104865 C--GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | ||| | | || | || | | ||| | | || ||| || | ||||||||||| | Sbjct 29490 CAAGACCAT-CAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 29548 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | | || | |||||| ||||| || || || |||| |||||||||||| ||||| | | Sbjct 29549 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTG 29608 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 105039 || ||| || ||||||||||| ||||| || | ||| ||| | || || || Sbjct 29609 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAA--TACTGTGCACCTGACGA 29666 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099 | ||||| |||||| | || || | |||||||| | || || | ||| | | | Sbjct 29667 GGTCGCTGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGAT 29724 Query 105100 GACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 | || | || | | | || || ||||| || | |||| || ||| | ||| Sbjct 29725 GGCAGCTACGACTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAAC 29784 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGA 105214 | | || || | || | ||||| ||| ||| || || || ||| | | Sbjct 29785 AAGATCATCGACATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGT 29841 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 ||| | || |||| | | ||||| ||||||||||| ||||| ||| | | ||| | | Sbjct 29842 CACAGACCTATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGACTC 29901 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 |||| || || ||| || || | ||||| | || || |||||||| || ||| Sbjct 29902 CCATTCGAGTCTCCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCAC 29961 Query 105335 GCCGCTCTTGAGGCGA---GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391 || || ||||| | ||| ||| | ||| || ||||| | || || || | Sbjct 29962 GCTGC-CTTGACTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACATAC 30018 Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 105451 || ||||| |||||||||||||| | ||| |||| ||||||| ||||||| | ||| | Sbjct 30019 GAAGGTTCCCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTAC 30077 Query 105452 C-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510 | || | ||||||| | | ||| ||| |||||| || | |||||||||||||| Sbjct 30078 CGATCTTTGGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAG 30137 Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 | | ||| | ||||| |||||||| ||| ||| |||||| | || || || || Sbjct 30138 TTTGCTCGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTG 30197 Query 105571 CTTTGAACCCTACACGACGAACATCTA 105597 || || || ||||| | |||||||| Sbjct 30198 TTTCGAGCCATACACATCCAACATCTA 30224 >seq868 Length=196860 Score = 158 bits (174), Expect = 1e-33 Identities = 352/521 (68%), Gaps = 22/521 (4%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| || || | ||||| || || ||||| | | ||| | | |||| | | | Sbjct 110516 AGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGACAAGGACTC 110457 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | | || ||| |||| ||| | || ||||| ||||||||||||||||||||| |||| Sbjct 110456 -TACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTT 110398 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 | ||| | |||| | ||| | |||||||| ||||| ||||||||||| |||||||| Sbjct 110397 CATTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCA 110338 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAA 94971 ||||||| ||||| |||||||| || |||||| || ||||| || ||| ||| Sbjct 110337 ACGAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC--- 110282 Query 94972 TTATTGCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGC 95024 | | || ||||| || | || | | || || | || ||| || || Sbjct 110281 ----TCCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGC 110226 Query 95025 CGTTGAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAA 95084 |||||||| ||| ||| ||| | ||||| ||||| || ||||| |||| ||||| Sbjct 110225 TGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAA 110166 Query 95085 TTCTGAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG 95144 ||| ||| |||| ||||||| || ||||| | || | | || Sbjct 110165 CGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTC 110108 Query 95145 GGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTC 95202 ||| | || || || ||| || ||||||||||| ||||||||||| ||| Sbjct 110107 GGTAACGAGAAGTATTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTT 110048 Query 95203 GACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 | ||| ||||| ||||||||||| ||| | || | ||||| Sbjct 110047 GCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 110007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583245270681200