Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq876 250 8e-61 seq762 174 5e-38 seq1384 138 3e-27 seq301 114 4e-20 seq829 107 6e-18 seq1324 89.7 2e-12 >seq876 Length=341431 Score = 250 bits (276), Expect = 8e-61 Identities = 502/740 (68%), Gaps = 22/740 (3%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 |||||||||||| | ||||| || || ||||| || | | | | | |||||||| | Sbjct 131990 ATAGGAATCGATCTGGGTACCACCTACTCTTGCGTGGGTATCTTCAGAGATGATCGTATC 132049 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| |||||||| || || || ||| | ||||| || || | ||| || ||||| || Sbjct 132050 GAAATCATTGCAAACGACCAGGGAAACCGCACAACACCTTCCTTCGTCGCCTTTACAGAT 132109 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 ||||||||| |||| || ||| |||| || || |||| || || |||| || || Sbjct 132110 ACTGAGCGTTTGATCGGAGATGCTGCCAAGAACCAAGTCGCCATGAACCCAATCAACACT 132169 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || ||||| ||||| || ||||| | |||| | |||| || || Sbjct 132170 GTCTTCGATGCCAAGCGTCTGATTGGACGCAAGTACGCAGATGCTGAGG--TC----CAG 132223 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATT 349492 ||||| | || ||||| || || |||||| || ||| ||| | || ||| | Sbjct 132224 GCTGATATGAAGCATTTCCCCTTCACTGTTCTT------GACCGTGGTGGAAAGCCAGTC 132277 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 | |||||||| | || || || | || ||||| ||| || || || || || ||| Sbjct 132278 GTCGAGGTTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCTGAGGAGATCTCTTCCATG 132337 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 | || || || |||| || | |||||| || || | || | ||| || | | || Sbjct 132338 ATCTTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTCGGAGGAACTGTCAACAACGCC 132397 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || ||||||||||||| || || | ||| |||||||| || ||||| ||||| || Sbjct 132398 GTCGTTACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCTACAAAGGATGCCGGT 132457 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 || || || | |||||||| |||| || || || || ||||| || || ||||| Sbjct 132458 CTGATCGCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCC 132517 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | | ||| || ||| | || || || ||| | ||||| Sbjct 132518 TACGGTCTTGACAAGAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGGA 132577 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 || ||||| ||||| || || | || | || ||||| |||||||| || || | || Sbjct 132578 GGAACTTTCGATGTCTCTCTTTTGACTATCGAGGAGGGTATTTTTGAGGTCAAGTCTACC 132637 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || ||||| || || | ||||| || || || || |||||||| ||| || || || Sbjct 132638 GCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAATCGTCTTGTTAACCACTTCGTA 132697 Query 349913 AAAGAATTTAAGCGTCAAGC 349932 | || ||||| || ||||| Sbjct 132698 AGTGAGTTTAAACG-CAAGC 132716 >seq762 Length=84765 Score = 174 bits (192), Expect = 5e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| ||||| ||||||||||| || || || |||||||| Sbjct 20255 CATACCACCACGAAGGCGAAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATC 20196 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| || || || ||||| || | || |||||||| || || || | ||||| || || Sbjct 20195 AGACAAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGG 20136 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || |||||||| | |||||||| ||| Sbjct 20135 TGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTC 20076 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| | |||||||||||| || || || || ||||||||||| Sbjct 20075 GACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| ||||| || || ||||| Sbjct 20027 CATACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATC 19968 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| ||||| ||||| || ||||| | |||||||||||| || Sbjct 19967 GGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGG 19908 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||| || || || | || ||||| || || | ||| |||| ||| Sbjct 19907 AGGGATGCCCTCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTC 19848 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || | ||||| || || || || || || Sbjct 19847 GACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 19809 Score = 107 bits (118), Expect = 6e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || ||||| ||||||||||| || || || || || || || || || ||||| || Sbjct 20461 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCC 20402 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 | || || |||||||| || || | ||||| || || || || || || |||||||| Sbjct 20401 AACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGG 20342 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || | || || || || || | ||||| | |||||||| || |||| |||||| Sbjct 20341 ATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTT 20282 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || || || || |||||||| Sbjct 20281 CCAGTCAAAGTCTTGACGAAGATCTGCAT 20253 Score = 100 bits (110), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || |||||||||||||| || || || || || | Sbjct 19739 TTTGCATACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGT 19680 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || || || || || || || ||||| ||||| | ||| ||||| | Sbjct 19679 AATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGT 19620 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| || || || || || || || ||| || ||||| || || | || || Sbjct 19619 CGGGGGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATAGTGTCCGAA 19561 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || || || || || | ||||| ||||| Sbjct 19560 GACTCGACCTCGAGAGTGATGGTCTTGCCGGT 19529 >seq1384 Length=59147 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||||||| || || || || | ||||| ||||| || || || |||||||| ||||| Sbjct 42868 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 42809 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | ||||||||| ||||| |||||||| || || ||||| || || | || ||||| ||| Sbjct 42808 AAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 42749 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 |||| ||| || | || || || || |||| |||||||||||| || ||||| || || Sbjct 42748 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 42690 >seq301 Length=99005 Score = 114 bits (126), Expect = 4e-20 Identities = 177/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 378194 CCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTT 378253 |||| | |||||| | || || | ||| || || || || ||||| | | ||| | Sbjct 69104 CCATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCT 69045 Query 378254 TAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAG 378313 |||| |||||||| || ||||| | |||||| |||| ||||||||||| || || |||| Sbjct 69044 TAACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAG 68985 Query 378314 GAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCAT 378373 | || || || | || | | || |||||| ||||| | | |||| || | ||||| Sbjct 68984 GTGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCAT 68925 Query 378374 ATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAA 378433 ||| || |||| ||||| || || | || || || | ||||| || ||||| || | Sbjct 68924 CTTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGA 68865 Query 378434 CATTCTGTTGACC 378446 || || ||||| Sbjct 68864 CAGATTGCTGACC 68852 >seq829 Length=133551 Score = 107 bits (118), Expect = 6e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || ||||||||||| ||||| || || || || || || || Sbjct 64742 ACCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 64801 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 64802 GAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGG 64861 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | ||| || | || || Sbjct 64862 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTAC 64921 Query 140690 TTCAAGTGTAACTGTCTTTCCGGT 140713 || || |||| |||||| || || Sbjct 64922 CTCTAGGGTAATTGTCTTGCCCGT 64945 >seq1324 Length=102552 Score = 89.7 bits (98), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || || ||||| || || || || |||||||| | ||| |||||| | || Sbjct 89146 TATCGGTATTGATTTGGGCACCACCTACTCTTGTGTGGGTGTGATGCAAAAGGGCAAGGT 89087 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 ||||| | | || |||||||| |||||| || || |||||||| ||||||||||| Sbjct 89086 CGAAATCCTCGTCAACGATCAAGGACACAGAATTACACCCTCATACGTGGCATTTACCGA 89027 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAA 349374 |||||| || |||| || | ||||| || || || || || || ||||| Sbjct 89026 TGATGAGCGATTGGTTGGAGACGCCGCAAAGAACCAGGCCGCCGCAAACCCAAA 88973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515213047760390