Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq876 250 8e-61
seq762 174 5e-38
seq1384 138 3e-27
seq301 114 4e-20
seq829 107 6e-18
seq1324 89.7 2e-12
>seq876
Length=341431
Score = 250 bits (276), Expect = 8e-61
Identities = 502/740 (68%), Gaps = 22/740 (3%)
Strand=Plus/Plus
Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261
|||||||||||| | ||||| || || ||||| || | | | | | |||||||| |
Sbjct 131990 ATAGGAATCGATCTGGGTACCACCTACTCTTGCGTGGGTATCTTCAGAGATGATCGTATC 132049
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
||||| |||||||| || || || ||| | ||||| || || | ||| || ||||| ||
Sbjct 132050 GAAATCATTGCAAACGACCAGGGAAACCGCACAACACCTTCCTTCGTCGCCTTTACAGAT 132109
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
||||||||| |||| || ||| |||| || || |||| || || |||| || ||
Sbjct 132110 ACTGAGCGTTTGATCGGAGATGCTGCCAAGAACCAAGTCGCCATGAACCCAATCAACACT 132169
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || ||||| ||||| || ||||| | |||| | |||| || ||
Sbjct 132170 GTCTTCGATGCCAAGCGTCTGATTGGACGCAAGTACGCAGATGCTGAGG--TC----CAG 132223
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT---AAACCAATT 349492
||||| | || ||||| || || |||||| || ||| ||| | || ||| |
Sbjct 132224 GCTGATATGAAGCATTTCCCCTTCACTGTTCTT------GACCGTGGTGGAAAGCCAGTC 132277
Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552
| |||||||| | || || || | || ||||| ||| || || || || || |||
Sbjct 132278 GTCGAGGTTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCTGAGGAGATCTCTTCCATG 132337
Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612
| || || || |||| || | |||||| || || | || | ||| || | | ||
Sbjct 132338 ATCTTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTCGGAGGAACTGTCAACAACGCC 132397
Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672
|| ||||||||||||| || || | ||| |||||||| || ||||| ||||| ||
Sbjct 132398 GTCGTTACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCTACAAAGGATGCCGGT 132457
Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732
|| || || | |||||||| |||| || || || || ||||| || || |||||
Sbjct 132458 CTGATCGCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCC 132517
Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792
|| || ||||| || | | ||| || ||| | || || || ||| | |||||
Sbjct 132518 TACGGTCTTGACAAGAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGGA 132577
Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852
|| ||||| ||||| || || | || | || ||||| |||||||| || || | ||
Sbjct 132578 GGAACTTTCGATGTCTCTCTTTTGACTATCGAGGAGGGTATTTTTGAGGTCAAGTCTACC 132637
Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912
|| ||||| || || | ||||| || || || || |||||||| ||| || || ||
Sbjct 132638 GCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAATCGTCTTGTTAACCACTTCGTA 132697
Query 349913 AAAGAATTTAAGCGTCAAGC 349932
| || ||||| || |||||
Sbjct 132698 AGTGAGTTTAAACG-CAAGC 132716
>seq762
Length=84765
Score = 174 bits (192), Expect = 5e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| ||||| ||||||||||| || || || ||||||||
Sbjct 20255 CATACCACCACGAAGGCGAAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATC 20196
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| || || || ||||| || | || |||||||| || || || | ||||| || ||
Sbjct 20195 AGACAAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGG 20136
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || |||||||| | |||||||| |||
Sbjct 20135 TGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTC 20076
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| | |||||||||||| || || || || |||||||||||
Sbjct 20075 GACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || ||||| ||||| ||||| || || |||||
Sbjct 20027 CATACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATC 19968
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || |||||||| ||||| ||||| || ||||| | |||||||||||| ||
Sbjct 19967 GGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGG 19908
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || ||||| || || || | || ||||| || || | ||| |||| |||
Sbjct 19907 AGGGATGCCCTCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTC 19848
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| || || | ||||| || || || || || ||
Sbjct 19847 GACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 19809
Score = 107 bits (118), Expect = 6e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588
|| ||||| ||||||||||| || || || || || || || || || ||||| ||
Sbjct 20461 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCC 20402
Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648
| || || |||||||| || || | ||||| || || || || || || ||||||||
Sbjct 20401 AACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGG 20342
Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708
|| || | || || || || || | ||||| | |||||||| || |||| ||||||
Sbjct 20341 ATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTT 20282
Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || | || || || || ||||||||
Sbjct 20281 CCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
Score = 100 bits (110), Expect = 9e-16
Identities = 151/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| ||||| | | || || |||||||||||||| || || || || || |
Sbjct 19739 TTTGCATACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGT 19680
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || || || || || || || ||||| ||||| | ||| ||||| |
Sbjct 19679 AATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGT 19620
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| || || || || || || || ||| || ||||| || || | || ||
Sbjct 19619 CGGGGGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATAGTGTCCGAA 19561
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
| || || || || || | ||||| |||||
Sbjct 19560 GACTCGACCTCGAGAGTGATGGTCTTGCCGGT 19529
>seq1384
Length=59147
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|||||||| || || || || | ||||| ||||| || || || |||||||| |||||
Sbjct 42868 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 42809
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| ||||||||| ||||| |||||||| || || ||||| || || | || ||||| |||
Sbjct 42808 AAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 42749
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|||| ||| || | || || || || |||| |||||||||||| || ||||| || ||
Sbjct 42748 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 42690
>seq301
Length=99005
Score = 114 bits (126), Expect = 4e-20
Identities = 177/253 (70%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 378194 CCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTT 378253
|||| | |||||| | || || | ||| || || || || ||||| | | ||| |
Sbjct 69104 CCATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCT 69045
Query 378254 TAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAG 378313
|||| |||||||| || ||||| | |||||| |||| ||||||||||| || || ||||
Sbjct 69044 TAACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAG 68985
Query 378314 GAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCAT 378373
| || || || | || | | || |||||| ||||| | | |||| || | |||||
Sbjct 68984 GTGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCAT 68925
Query 378374 ATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAA 378433
||| || |||| ||||| || || | || || || | ||||| || ||||| || |
Sbjct 68924 CTTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGA 68865
Query 378434 CATTCTGTTGACC 378446
|| || |||||
Sbjct 68864 CAGATTGCTGACC 68852
>seq829
Length=133551
Score = 107 bits (118), Expect = 6e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||| ||||| | | || || ||||||||||| ||||| || || || || || || ||
Sbjct 64742 ACCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 64801
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || |||||||| ||||| || || || ||||| || ||||| || || || ||
Sbjct 64802 GAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGG 64861
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| || || || ||||| || || | || || || || || | ||| || | || ||
Sbjct 64862 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTAC 64921
Query 140690 TTCAAGTGTAACTGTCTTTCCGGT 140713
|| || |||| |||||| || ||
Sbjct 64922 CTCTAGGGTAATTGTCTTGCCCGT 64945
>seq1324
Length=102552
Score = 89.7 bits (98), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260
||| || || ||||| || || || || |||||||| | ||| |||||| | ||
Sbjct 89146 TATCGGTATTGATTTGGGCACCACCTACTCTTGTGTGGGTGTGATGCAAAAGGGCAAGGT 89087
Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320
||||| | | || |||||||| |||||| || || |||||||| |||||||||||
Sbjct 89086 CGAAATCCTCGTCAACGATCAAGGACACAGAATTACACCCTCATACGTGGCATTTACCGA 89027
Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAA 349374
|||||| || |||| || | ||||| || || || || || || |||||
Sbjct 89026 TGATGAGCGATTGGTTGGAGACGCCGCAAAGAACCAGGCCGCCGCAAACCCAAA 88973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515213047760390
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