Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1094 197 2e-45 seq705 120 3e-22 >seq1094 Length=98106 Score = 197 bits (218), Expect = 2e-45 Identities = 470/705 (67%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| | || ||| | ||||||||||| ||||| | |||||||| || | Sbjct 28909 GAGACATACAATTTGATGTCCAGCAAGTACTTTACACACGCGTCTCCAACCCTCTTTGCC 28968 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || || | || | || |||||| || | | |||||||| ||| Sbjct 28969 GCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGACAGT 29028 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 |||||||| || ||||| || |||||| |||||| ||||||||| | || ||| Sbjct 29029 ATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGGAGGT 29088 Query 53423 ATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 |||||| | | | | | ||| ||||||| | || | || || || |||| Sbjct 29089 ATCGGTCTGAATGTCCACAGAA--TCCGTGCCACTGGAGCTTACATTGCTGGCACAAACG 29146 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | || | || || || ||||||||||| || ||||||||||| ||| | || || Sbjct 29147 GGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGTTG 29206 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 |||||||||| |||||| || | ||||| |||||||||||||| |||||||| | Sbjct 29207 ACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGCTG 29266 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 | | | ||||| || || || | ||| || || | || || | ||| || | Sbjct 29267 ATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGAGGAAGTTCGCGCTCGCG 29326 Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719 | || || ||| ||||| |||||||| || ||||||||| | || |||||| | | Sbjct 29327 ATCTCTTCTAC-GCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGT 29385 Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779 ||| ||||||||||| |||||||||||||| || | ||| |||||||| || Sbjct 29386 ACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAA 29445 Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833 ||| | | | ||| || |||| | || |||| ||| |||| || Sbjct 29446 TTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGC------AAGACCATC 29499 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 ||||| | || | ||| | | |||||| || || ||||| |||| || | | Sbjct 29500 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 29559 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||||||||| | |||| ||||| || ||||||||| Sbjct 29560 ATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAAC 29604 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||||| ||| || |||||||| | ||| | | || | ||| || Sbjct 30377 TCAAGGCTCTTTACAAGACTGTCTGGGAGATCTCCCAGCGTACCATCGTTCAGATGGCTG 30436 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 ||||||||||||| | ||||||||||||||| || |||||||| |||| || |||| Sbjct 30437 CTGATCGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAA 30496 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||| | | |||||||| || |||||| ||| || ||||| || | Sbjct 30497 CTATGGGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGGCA 30556 Query 55908 TGTACTATCTGCGGACC 55924 ||||||| || || ||| Sbjct 30557 TGTACTACCTCCGTACC 30573 >seq705 Length=119503 Score = 120 bits (132), Expect = 3e-22 Identities = 186/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| |||| || | || | | |||||| | Sbjct 62277 GTGAAAATGTAACGAGGGCTAGCAGCATCACTGCCTCCCGATAGCCTAGAACCGAAAGAT 62218 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||||||| |||||| ||||| |||||| | ||| | ||||| || |||| ||| Sbjct 62217 CCACTCGGTTCCAAGCAGTTCACGTTGTTTGAGCCGATGAAGTTCTGGGCCAGACCAACA 62158 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || | | || || || || ||||| || | ||||| | |||||| || Sbjct 62157 ATAGTCATGTGCATGGAAGCTTCGCCGTGATGATAAGCAGCGTGCTCGGACACGTATCCT 62098 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 || |||| | || ||||||||| || || || ||||| || ||| | || ||| Sbjct 62097 GCTAGCTCGACAACTTTCATGTCTTTGGTGAGATTTCGCTTGAAACAAGCAAACATAACC 62038 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 || || |||| ||||| | ||||| Sbjct 62037 TTTCGTTGACCAGGCTTTAATCCATC 62012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201430374000