Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 197 2e-45
seq705 120 3e-22
>seq1094
Length=98106
Score = 197 bits (218), Expect = 2e-45
Identities = 470/705 (67%), Gaps = 18/705 (3%)
Strand=Plus/Plus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||| ||| | || ||| | ||||||||||| ||||| | |||||||| || |
Sbjct 28909 GAGACATACAATTTGATGTCCAGCAAGTACTTTACACACGCGTCTCCAACCCTCTTTGCC 28968
Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362
|| || || || | || | || |||||| || | | |||||||| |||
Sbjct 28969 GCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGACAGT 29028
Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422
|||||||| || ||||| || |||||| |||||| ||||||||| | || |||
Sbjct 29029 ATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGGAGGT 29088
Query 53423 ATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
|||||| | | | | | ||| ||||||| | || | || || || ||||
Sbjct 29089 ATCGGTCTGAATGTCCACAGAA--TCCGTGCCACTGGAGCTTACATTGCTGGCACAAACG 29146
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
| | || | || || || ||||||||||| || ||||||||||| ||| | || ||
Sbjct 29147 GGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGTTG 29206
Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600
|||||||||| |||||| || | ||||| |||||||||||||| |||||||| |
Sbjct 29207 ACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGCTG 29266
Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660
| | | ||||| || || || | ||| || || | || || | ||| || |
Sbjct 29267 ATGTCTTTGAGTTCCTTGATCTCAGAAAGAACCACGGAAAGGAGGAAGTTCGCGCTCGCG 29326
Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAG 53719
| || || ||| ||||| |||||||| || ||||||||| | || |||||| | |
Sbjct 29327 ATCTCTTCTAC-GCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGT 29385
Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAG 53779
||| ||||||||||| |||||||||||||| || | ||| |||||||| ||
Sbjct 29386 ACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAA 29445
Query 53780 TTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833
||| | | | ||| || |||| | || |||| ||| |||| ||
Sbjct 29446 TTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGC------AAGACCATC 29499
Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893
||||| | || | ||| | | |||||| || || ||||| |||| || | |
Sbjct 29500 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 29559
Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||||||||| | |||| ||||| || |||||||||
Sbjct 29560 ATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAAC 29604
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| ||||| ||| || |||||||| | ||| | | || | ||| ||
Sbjct 30377 TCAAGGCTCTTTACAAGACTGTCTGGGAGATCTCCCAGCGTACCATCGTTCAGATGGCTG 30436
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
||||||||||||| | ||||||||||||||| || |||||||| |||| || ||||
Sbjct 30437 CTGATCGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAA 30496
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| ||| |||| | | |||||||| || |||||| ||| || ||||| || |
Sbjct 30497 CTATGGGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGGCA 30556
Query 55908 TGTACTATCTGCGGACC 55924
||||||| || || |||
Sbjct 30557 TGTACTACCTCCGTACC 30573
>seq705
Length=119503
Score = 120 bits (132), Expect = 3e-22
Identities = 186/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| ||| |||||||| |||| || | || | | |||||| |
Sbjct 62277 GTGAAAATGTAACGAGGGCTAGCAGCATCACTGCCTCCCGATAGCCTAGAACCGAAAGAT 62218
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|||||||| |||||| ||||| |||||| | ||| | ||||| || |||| |||
Sbjct 62217 CCACTCGGTTCCAAGCAGTTCACGTTGTTTGAGCCGATGAAGTTCTGGGCCAGACCAACA 62158
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || || | | || || || || ||||| || | ||||| | |||||| ||
Sbjct 62157 ATAGTCATGTGCATGGAAGCTTCGCCGTGATGATAAGCAGCGTGCTCGGACACGTATCCT 62098
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
|| |||| | || ||||||||| || || || ||||| || ||| | || |||
Sbjct 62097 GCTAGCTCGACAACTTTCATGTCTTTGGTGAGATTTCGCTTGAAACAAGCAAACATAACC 62038
Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570
|| || |||| ||||| | |||||
Sbjct 62037 TTTCGTTGACCAGGCTTTAATCCATC 62012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547201430374000
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