Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1094 170 2e-37 seq762 168 8e-37 seq829 145 9e-30 seq868 136 5e-27 seq1384 134 2e-26 >seq1094 Length=98106 Score = 170 bits (188), Expect = 2e-37 Identities = 503/768 (65%), Gaps = 13/768 (2%) Strand=Plus/Minus Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||| ||||| ||||| || ||| ||||||||| ||||||||| |||| | Sbjct 29615 ATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAA 29556 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102 ||| | ||||||||| || | || |||||||| || ||||| || | ||||||| Sbjct 29555 GGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATG 29496 Query 81103 ACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCG 81162 |||||| |||||||| ||| | ||||| | || | || || | | ||||| Sbjct 29495 GTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCG 29436 Query 81163 TGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAG-GTGCCAGTCGGTGTCGTT 81221 | || |||| || | ||||||||||| ||||||||||| || | || || || Sbjct 29435 TAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTC-TT 29377 Query 81222 CTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCG 81281 ||| ||| ||||||||| || || ||||| || ||| ||| || ||||| |||| Sbjct 29376 CTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCG--AGCG 29319 Query 81282 CG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGC 81339 || | ||||| | || ||||| | | || || || || | || || || ||| Sbjct 29318 CGAACTTCCTCCTTTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGC 29259 Query 81340 CATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAA 81396 |||||||| || || | |||| | || ||| | |||||||||| || || Sbjct 29258 CATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATAT 29199 Query 81397 CGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTA 81456 | ||| || ||| || || || | |||||| | ||||| | || | ||||| || Sbjct 29198 CTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTG 29139 Query 81457 CCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGAC 81516 || | || | || |||| || | || || |||||||| || || | Sbjct 29138 CCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCA 29079 Query 81517 CACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTT 81576 ||| || ||| ||||| || | || || ||||| || ||||| || || | Sbjct 29078 TTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCC 29019 Query 81577 TTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT--TGAGCCGGCATTGAACA 81634 |||||||| | |||||| || || | | | |||| | || |||||| || | Sbjct 29018 TTCATGTCGATCAAGAAGCATGAAGAGAGTT--GTGCTTGTGGTGTGCCGGCGGCAAAGA 28961 Query 81635 GTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGC 81694 | ||||| | |||||| | || || | | ||||||| | || || || | | | Sbjct 28960 GGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCAC 28901 Query 81695 GTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGT 81742 |||||| || ||||||||||||| ||| || | ||| | ||||| Sbjct 28900 TCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGT 28853 >seq762 Length=84765 Score = 168 bits (186), Expect = 8e-37 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || |||||||||||||| || |||||||| | Sbjct 20253 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 20312 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||| |||||||| || || || |||||| Sbjct 20313 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 20372 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||| | || ||||||||||||||||| | ||||||| || || | ||| ||||| || Sbjct 20373 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGC-GACTACAA 20431 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || ||||| ||||| || |||||||||||||| || ||| Sbjct 20432 CATCCAGAAGGAGTCTACTCTCCATCTGGTGTTGCGTCTTCGCGGAGGTCAA 20483 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || ||||| ||||| || || || ||||| || ||| | Sbjct 20025 ATGCAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 20084 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || || |||||||||||||| || || || |||||| Sbjct 20085 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 20144 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| ||||| | ||||||| |||||| | | || ||||| Sbjct 20145 CAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAAC 20204 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| ||||| || | || ||||| ||||| Sbjct 20205 ATCCAGAAGGAGTCTACTCTCCATCTGGTTCTTCGCCTTCGTGGTGG 20251 Score = 149 bits (164), Expect = 7e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || ||||| ||||| ||||| || | || | ||| | ||| Sbjct 19527 TTACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGA 19586 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 || || || ||||||||||| ||||| || |||||||||||| | || || ||||| | Sbjct 19587 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 19646 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| |||||||| | ||| || || | || || || |||| |||||||| ||||||| Sbjct 19647 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 19706 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||| | |||||||| || || Sbjct 19707 ATCTCGTCCTCCGTCTTCGTGGCGG 19731 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| ||||| |||||||| || ||||| || || || ||| |||| ||| | Sbjct 19809 GTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGAC 19868 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || || || |||||||| || ||||| || ||||| ||| | || Sbjct 19869 AATGTCAAGTCGAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATC 19928 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||||||||| |||| || ||||| | || || || |||||||||| Sbjct 19929 TTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGGAG 19988 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || | ||| | ||||| || ||||| Sbjct 19989 TCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGG 20023 >seq829 Length=133551 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| ||||| || ||||| ||||| |||| || | || | ||| | Sbjct 64945 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCC 64886 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| || ||||| || || || || || || || ||| Sbjct 64885 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 64826 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 |||||||| |||| |||||||| | ||||| || |||| ||||| || ||||||||| Sbjct 64825 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 64766 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| | ||||| || || || Sbjct 64765 CTAGTCCTCCGTCTCCGTGGAGG 64743 >seq868 Length=196860 Score = 136 bits (150), Expect = 5e-27 Identities = 312/463 (67%), Gaps = 14/463 (3%) Strand=Plus/Minus Query 64713 TCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTC 64772 ||||||||||| || |||||| ||| || || || ||||| || || |||||| || Sbjct 110447 TCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTC 110388 Query 64773 TATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGAT 64832 ||| |||||| | || ||||| || |||||||||||||| | || || |||||||| || Sbjct 110387 TATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCAT 110328 Query 64833 CTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAA--- 64889 ||| || ||||| || |||||| || ||||| | ||||| |||| | || Sbjct 110327 CTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCA 110268 Query 64890 --GGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAA 64947 | ||| | | || | | | || || | | | |||||| || || || Sbjct 110267 TCGTCCAAGCAAGCA---AGCAGTCCAA--GACGTTATTACCGAGGCTGTTGAGATCGAG 110213 Query 64948 AAGGAATTCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATG 65007 | || ||| | |||| || ||||| ||| ||| |||||||| | || | | |||| Sbjct 110212 CAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATG 110153 Query 65008 AAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGT-TTGGTATTAAGCCCTA 65066 || || || || || || || || ||||| |||| | ||| | | |||| || || Sbjct 110152 AAGCAATACATTGAGTTCGTCGCTGATCGTCTGC-TCCTCGCTCTCGGTAACGAGAAGTA 110094 Query 65067 CTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAA 65126 | || || | || |||||||||| ||||||| ||| ||| | || ||||| || Sbjct 110093 TTACAAGTCCGCCAACCCATTTGACTTTATGGAGAACATCTCCCTTGCCGGAAAGACCAA 110034 Query 65127 CTTTTTTGAAAAGAGGGTAGGTGATTACTCAAAGCATCTTGTG 65169 ||| || || ||| | || | || ||| |||| |||| ||| Sbjct 110033 CTTCTTCGAGAAGCGTGTCGCCGACTAC-CAAA-AATCTGGTG 109993 >seq1384 Length=59147 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| ||||| || || ||||| ||||| ||||| || ||||| ||||| |||| || Sbjct 42689 CTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGAT 42748 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || |||||||||||||||||||| || |||||||| ||| | Sbjct 42749 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGCAACGTTT 42808 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||| ||||| |||||||||| || || || | ||||| || | ||||| Sbjct 42809 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 42868 Query 27594 GG 27595 || Sbjct 42869 GG 42870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570295215485600