Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq762 87.8 1e-12
>seq762
Length=84765
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | || | ||| ||||| ||||| || ||||| ||||| ||
Sbjct 19731 CCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAG 19672
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || || || || || |||||||| ||||| || ||
Sbjct 19671 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGA 19612
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| |||||||||||| ||||||
Sbjct 19611 ATGCCCTCCTTGTCTTGGATCTT 19589
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537
|| || | |||||||||||||| ||||||||| |||||| || ||||| || | ||
Sbjct 20479 CCTCCGCGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20420
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|||||| || | || || | || ||||| ||||| || | | ||| ||||| || |
Sbjct 20419 AAAGTG--CGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTG 20362
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | |||||||| || |||| || | || ||| | |||||||| |||
Sbjct 20361 GGATACCCTCCTTATCCTGGATC-TTGGACTTGACGTTGTCGATTGTGTCAGACGACTCA 20303
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||||| || || || || || || || || || || || ||||||||
Sbjct 20302 ACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314721429816290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |