Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq762 143 6e-29 seq829 131 4e-25 seq1384 111 4e-19 seq1947 86.0 1e-11 >seq762 Length=84765 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||||||||| || ||||||| |||||||||| || || | |||||| Sbjct 20008 AGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 19949 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| | ||||| || ||||| || || || ||||| ||| Sbjct 19948 TCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCT 19889 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||| || || | ||| || || | ||||| ||| Sbjct 19888 TGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTC 19829 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| || | ||| || Sbjct 19828 TTGCCAGTAAGAGTCTT 19812 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || || ||||| ||||| || |||| |||||||| | | ||| Sbjct 19726 ACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGT 19667 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || |||||||| ||||| || Sbjct 19666 GCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCC 19607 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| ||| ||||| ||||| || | || || || | Sbjct 19606 CTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAG 19547 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 19546 AGTGATGGTCTTGCCGGT 19529 >seq829 Length=133551 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || ||||| || || || |||| ||||| |||| | || | |||||| Sbjct 64758 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 64817 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || |||||||||||||| ||||| || |||||||| Sbjct 64818 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 64877 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| || || || | || || |||| || || ||| Sbjct 64878 TGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTC 64937 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 64938 TTGCCCGTCA 64947 >seq1384 Length=59147 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||| | ||||| |||| | ||||| ||||| || |||||||| ||||||||||| Sbjct 42868 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 42809 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||| ||||| || ||||| || |||||||| |||||||| ||| ||| || Sbjct 42808 AAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 42749 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || || |||| || || || | || || ||||| || || | |||||| | ||| Sbjct 42748 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 42690 >seq1947 Length=513010 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| || ||||||||||| || || |||||||| ||||| |||||||| Sbjct 87251 GAAAATTTGTCCATCGGTGATAGAGATAACGTTGGTTGGGATATAGGCAGACACATCACC 87310 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| || || | | || | ||| || || ||||||||||| Sbjct 87311 ACCTTGGGTCTCAATGATGGGAAGGGCAGTCAGAGATCCACCACC 87355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192498655078220