Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1094 275 9e-69 >seq1094 Length=98106 Score = 275 bits (304), Expect = 9e-69 Identities = 1045/1617 (65%), Gaps = 36/1617 (2%) Strand=Plus/Minus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || || ||||| |||| || || | | ||||| || |||||||| Sbjct 30615 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 30556 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || ||||||| |||| || ||| ||||| || || | ||| | | Sbjct 30555 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 30496 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 ||||| || || || |||||||| || || |||||||| || || | |||||| Sbjct 30495 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 30436 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||| | | ||||| || | || ||||| | ||| ||| ||| ||||| Sbjct 30435 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 30376 Query 77009 ATCATCTGGAAGGTTTGT---ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| | |||| || | |||||| |||||||| ||||| | || || ||||| Sbjct 30375 ATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 30316 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | ||| ||| | | | || | | | | | | ||| ||||| | Sbjct 30315 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGAC 30256 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| ||||| |||| ||| || | || | ||| || || || ||||| || | | | Sbjct 30255 TTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACA 30196 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||| || | |||||| ||| |||||||||||||| || || | ||||| Sbjct 30195 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 30136 Query 77246 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 77303 || | ||||| || || | |||||| | ||| || | ||| ||||||||||| Sbjct 30135 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 30078 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTA 77363 | |||| ||| | ||| | ||||||||| || ||| | ||| || || | Sbjct 30077 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 30018 Query 77364 TATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||||| || |||| || | ||| || || || ||| | | ||| || ||| Sbjct 30017 TATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGATGAAGTCAAGGCAGCGTG 29959 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 || || || ||||| |||| ||||||||| || || || | || || || | Sbjct 29958 GTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGGG-A 29900 Query 77483 ATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTC 77541 | || || | ||| |||| || | ||||| || |||| | |||||||||| || | Sbjct 29899 GTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGAC 29840 Query 77542 TCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGA 77601 |||| | || || |||| ||| || || || ||||| || || || || | Sbjct 29839 GGAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 29780 Query 77602 GATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC-- 77659 || | || || || | || || | || || |||| || | || ||||| Sbjct 29779 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCAT 29720 Query 77660 TATAACAAACAT--GTTC--AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 | | || | ||| | ||| | ||| || | |||||||| || ||||| | || Sbjct 29719 TTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG 29660 Query 77716 CGTTGGCA-TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 || || |||| | |||||| || || ||||| | ||| || || || || Sbjct 29659 -GTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 29601 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 | || || |||||| ||||| | ||||| || || || || || | ||||| || Sbjct 29600 TTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCG 29541 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATC-- 77892 | || | |||| || || | ||| | | ||| | || || | ||| | Sbjct 29540 GTTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCC 29484 Query 77893 --GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATC 77950 |||| ||| || || | ||| || |||||||| || || |||||||| | Sbjct 29483 TTGCCT-TCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 29425 Query 77951 CAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTT 78010 | || ||||| || || |||||||||| || ||| ||||| | || ||| || || Sbjct 29424 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTT 29365 Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATT 78070 ||| |||||||| || ||||||||||| || ||||| || | | | ||| || || Sbjct 29364 CATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTT 29305 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 ||| |||||| | ||||| || ||||| | | ||||| |||||||| || || || Sbjct 29304 TCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTA 29245 Query 78131 TATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 || || | | | ||||| || ||||| || ||||| || | ||||||||| ||||| || Sbjct 29244 GATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTT 29185 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACT 78250 |||||| | ||| |||| ||||||||| || | || ||||| |||| ||| ||| Sbjct 29184 GAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGC 29125 Query 78251 TCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATA 78306 |||| | || || || | |||| || || || ||||| || |||| || | Sbjct 29124 TCCAGTGGCACGGATTCT----GTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGA 29069 Query 78307 TTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 | | || ||| || | |||||||| ||||| || |||||||| ||| |||||| Sbjct 29068 TCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 29012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694650304443200