Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 273 3e-68
seq868 102 1e-16
>seq1094
Length=98106
Score = 273 bits (302), Expect = 3e-68
Identities = 1044/1614 (65%), Gaps = 30/1614 (2%)
Strand=Plus/Minus
Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423
||||| ||| | ||||| |||||||||| ||| || | | ||||| || ||||||||
Sbjct 30615 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 30556
Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483
|| || || ||||||| |||| || ||| ||||| || || | ||| | |
Sbjct 30555 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 30496
Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543
||||| || || || |||||||| || || |||||||| || || | ||||||
Sbjct 30495 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 30436
Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603
||||| | | ||||| || | || ||||| | ||| ||| ||| |||||
Sbjct 30435 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 30376
Query 75604 ATCATCTGGAAGATTTGT---ATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660
||| | |||| ||| | |||||| ||||| || ||||| | || || |||||
Sbjct 30375 ATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 30316
Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720
|| | ||| ||| | | ||| | | | | | | ||| ||||| |
Sbjct 30315 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGAC 30256
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
||| ||||| |||| ||| || | ||| | ||| || || || ||||| || | | |
Sbjct 30255 TTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACA 30196
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
|| ||| || | |||||| || ||||| |||||||| || || | |||||
Sbjct 30195 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 30136
Query 75841 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 75898
|| | ||||| || || | |||||| | ||| || | ||| |||||||||||
Sbjct 30135 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 30078
Query 75899 GATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958
| ||| ||| | ||| | ||||||||| || ||| | ||| || || |
Sbjct 30077 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 30018
Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG-CAACTCGCCTCTAACGCACCGTA 76017
||||| |||||||| || | || | || || || || | || || ||| |||
Sbjct 30017 TATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTG 29959
Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077
|| || || ||||| |||| |||| |||| || || || || || || || |
Sbjct 29958 GTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGGG-A 29900
Query 76078 ATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136
| || || | || |||| || || ||||| || |||| | |||||||||| || |
Sbjct 29899 GTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGAC 29840
Query 76137 TCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGA 76196
|||| | || || |||| |||||| || || || || || || || || |
Sbjct 29839 GGAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 29780
Query 76197 GATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC-- 76254
|| | || || || | || || | || || |||| || | | |||||
Sbjct 29779 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCAT 29720
Query 76255 TATCACAAACATA--TTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310
| | || || || ||||| | ||| || | |||||||| || ||||| | ||
Sbjct 29719 TTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG 29660
Query 76311 CATTGGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369
| || |||| | |||||| ||||| ||||| | ||| || ||||| ||
Sbjct 29659 G-TGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 29601
Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429
| || || |||||| ||| || | ||||| || || | || || |||| || ||
Sbjct 29600 TTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCG 29541
Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGC 76489
| || | |||| || || | ||| | | ||| | || || | ||| | |
Sbjct 29540 GTTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCC 29484
Query 76490 TTCTCTCTT---TCATA-TTGTG-TATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544
|| || | || || || | || | | || |||||||| || || ||||||||
Sbjct 29483 TTGCCTTCTGCCTCGTACTTCTCATAGAGAGCC--TCAAATTCGTCACCGTAAACATCAG 29426
Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604
| | ||| || || || || || ||||||| || ||| ||||| | || ||| || |
Sbjct 29425 CAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCT 29366
Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664
|||| |||||||| || ||||||||||| || ||||| || | | | ||| || |
Sbjct 29365 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 29306
Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724
|||| |||||| | ||||| |||||||| | | ||||| |||||||| || || |
Sbjct 29305 TTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGT 29246
Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784
| ||||| | | |||| || || ||||| || ||||| || | ||||||||| ||||| |
Sbjct 29245 AGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGT 29186
Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844
| |||||| | ||| |||| ||| ||||| || | || ||||| |||| ||| |||
Sbjct 29185 TGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAG 29126
Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904
|||| ||||| || | | | || || || ||||| || | || ||||| |
Sbjct 29125 CTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCA 29066
Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958
||||| || | || || || || || || ||||| || ||| ||||||
Sbjct 29065 TGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 29012
>seq868
Length=196860
Score = 102 bits (112), Expect = 1e-16
Identities = 222/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Plus
Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911
|| || |||||||| || ||| || | || | | || |||| ||||| || ||
Sbjct 110567 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 110626
Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971
| ||| || | || || || ||||| || || || || || ||||| || ||
Sbjct 110627 AGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 110686
Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031
| || |||| | ||| |||||| | ||||| || | ||||| || || |||
Sbjct 110687 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTAACAATT 110746
Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091
|| ||| ||||| || ||||| | || || | ||| ||| | |||||| | |
Sbjct 110747 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 110806
Query 47092 AGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148
||| || |||||||| | || ||| || || | ||| | |||||| || |||||||||
Sbjct 110807 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 110866
Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180
|| |||||||| || || ||||| | ||| ||
Sbjct 110867 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 110898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712915418121600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |