Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1094 273 3e-68 seq868 102 1e-16 >seq1094 Length=98106 Score = 273 bits (302), Expect = 3e-68 Identities = 1044/1614 (65%), Gaps = 30/1614 (2%) Strand=Plus/Minus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | ||||| |||||||||| ||| || | | ||||| || |||||||| Sbjct 30615 TTCTTGATCGACGGTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACAT 30556 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || ||||||| |||| || ||| ||||| || || | ||| | | Sbjct 30555 GCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGT 30496 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 ||||| || || || |||||||| || || |||||||| || || | |||||| Sbjct 30495 TGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGC 30436 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||| | | ||||| || | || ||||| | ||| ||| ||| ||||| Sbjct 30435 AGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGAT 30376 Query 75604 ATCATCTGGAAGATTTGT---ATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| | |||| ||| | |||||| ||||| || ||||| | || || ||||| Sbjct 30375 ATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTT 30316 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | ||| ||| | | ||| | | | | | | ||| ||||| | Sbjct 30315 CATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAATAACCAAGGGTTAACGAC 30256 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| ||||| |||| ||| || | ||| | ||| || || || ||||| || | | | Sbjct 30255 TTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACA 30196 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 || ||| || | |||||| || ||||| |||||||| || || | ||||| Sbjct 30195 CTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACT 30136 Query 75841 ATTTCTGAGACCATG-TGTTCTGATTTTAT-CTTTTAGATATTTCCAATCCCAAAGATCT 75898 || | ||||| || || | |||||| | ||| || | ||| ||||||||||| Sbjct 30135 GTTACGAAGACCGTGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCG 30078 Query 75899 GATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTA 75958 | ||| ||| | ||| | ||||||||| || ||| | ||| || || | Sbjct 30077 GTAGGTGTAACCTTCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCG 30018 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG-CAACTCGCCTCTAACGCACCGTA 76017 ||||| |||||||| || | || | || || || || | || || ||| ||| Sbjct 30017 TATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTG 29959 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 || || || ||||| |||| |||| |||| || || || || || || || | Sbjct 29958 GTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGAGACTCGAATGGG-A 29900 Query 76078 ATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136 | || || | || |||| || || ||||| || |||| | |||||||||| || | Sbjct 29899 GTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGAC 29840 Query 76137 TCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGA 76196 |||| | || || |||| |||||| || || || || || || || || | Sbjct 29839 GGAAATTGCTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 29780 Query 76197 GATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC-- 76254 || | || || || | || || | || || |||| || | | ||||| Sbjct 29779 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCAT 29720 Query 76255 TATCACAAACATA--TTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAG 76310 | | || || || ||||| | ||| || | |||||||| || ||||| | || Sbjct 29719 TTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG 29660 Query 76311 CATTGGCA-TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 | || |||| | |||||| ||||| ||||| | ||| || ||||| || Sbjct 29659 G-TGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 29601 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 | || || |||||| ||| || | ||||| || || | || || |||| || || Sbjct 29600 TTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCG 29541 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGC 76489 | || | |||| || || | ||| | | ||| | || || | ||| | | Sbjct 29540 GTTTGCGCCTCGAGGATGGAGTACCAAA-GCTTCTGGGCCTTG--ATGGTCTTGCGACCC 29484 Query 76490 TTCTCTCTT---TCATA-TTGTG-TATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 || || | || || || | || | | || |||||||| || || |||||||| Sbjct 29483 TTGCCTTCTGCCTCGTACTTCTCATAGAGAGCC--TCAAATTCGTCACCGTAAACATCAG 29426 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 | | ||| || || || || || ||||||| || ||| ||||| | || ||| || | Sbjct 29425 CAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCT 29366 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 |||| |||||||| || ||||||||||| || ||||| || | | | ||| || | Sbjct 29365 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 29306 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 |||| |||||| | ||||| |||||||| | | ||||| |||||||| || || | Sbjct 29305 TTCCGTGGTTCTTTCTGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGT 29246 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTAT 76784 | ||||| | | |||| || || ||||| || ||||| || | ||||||||| ||||| | Sbjct 29245 AGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGT 29186 Query 76785 TATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAAC 76844 | |||||| | ||| |||| ||| ||||| || | || ||||| |||| ||| ||| Sbjct 29185 TGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAG 29126 Query 76845 TTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 |||| ||||| || | | | || || || ||||| || | || ||||| | Sbjct 29125 CTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCA 29066 Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958 ||||| || | || || || || || || ||||| || ||| |||||| Sbjct 29065 TGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 29012 >seq868 Length=196860 Score = 102 bits (112), Expect = 1e-16 Identities = 222/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 46852 GTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATT 46911 || || |||||||| || ||| || | || | | || |||| ||||| || || Sbjct 110567 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 110626 Query 46912 AAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACAT 46971 | ||| || | || || || ||||| || || || || || ||||| || || Sbjct 110627 AGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 110686 Query 46972 CTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATT 47031 | || |||| | ||| |||||| | ||||| || | ||||| || || ||| Sbjct 110687 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTAACAATT 110746 Query 47032 CCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 || ||| ||||| || ||||| | || || | ||| ||| | |||||| | | Sbjct 110747 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 110806 Query 47092 AGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 ||| || |||||||| | || ||| || || | ||| | |||||| || ||||||||| Sbjct 110807 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 110866 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || |||||||| || || ||||| | ||| || Sbjct 110867 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 110898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712915418121600