Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq762 120 7e-22 seq829 100 7e-16 >seq762 Length=84765 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| ||||||||||| || ||||||||||| ||| ||||| | ||||| || Sbjct 20461 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCC 20402 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || || ||||| ||||||||||| | | ||| || ||||| || || Sbjct 20401 AACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGG 20342 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||| | || | |||| || ||| ||||| ||||||||||| || Sbjct 20341 ATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTT 20282 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| ||||||| |||||| Sbjct 20281 CCAGTCAAAGTCTTGACGAAGATCTGCAT 20253 Score = 114 bits (126), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || ||||| ||||| ||||||||||||||||||| | || | Sbjct 20015 GAGACGGAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCG 19956 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||||||||| | | ||||| || | | ||| || Sbjct 19955 GCCATCTTCGAGTTGCTTT--CCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCC 19898 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| | || | | | || || || ||||| ||| Sbjct 19897 TCCTTATCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGA 19838 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 || || || ||||| || |||||||| |||| Sbjct 19837 GTGATGGTCTTGCCAGTAAGAGTCTTGACGA 19807 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||||||||| || |||||||| ||||| | || || | ||||| Sbjct 20236 AGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCC 20177 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || ||||| || || ||||||||||| | | ||| || ||||| | Sbjct 20176 TCCAACTGCTTT--CCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGT 20119 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || ||| ||||| | || | | || || || || || || || || | Sbjct 20118 CCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTG 20059 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||||||||| | |||||| Sbjct 20058 TCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||||||||| || || |||||||||||||| | | ||| | || || Sbjct 19717 GAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTC 19658 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| | | ||||||||| | | || || ||||| || Sbjct 19657 CTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 19598 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | |||| ||| ||| || || ||||| || || Sbjct 19597 TTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGT 19538 Query 152072 TTTGCCCGT 152080 ||||| || Sbjct 19537 CTTGCCGGT 19529 >seq829 Length=133551 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||||||||| ||||| || ||||||||||| |||| | || | Sbjct 64751 GAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACG 64810 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || ||||||||||| || | || ||||| | | || || || Sbjct 64811 GCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTC 64870 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | || ||| |||||| || || || Sbjct 64871 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGT 64930 Query 152066 AATAGTTTTGCCCGT 152080 ||| || |||||||| Sbjct 64931 AATTGTCTTGCCCGT 64945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153789311509230