Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq762 118 8e-22
seq1384 100 2e-16
>seq762
Length=84765
Score = 118 bits (130), Expect = 8e-22
Identities = 148/201 (74%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || ||| ||||||||||||||||||||||| || ||| | || ||
Sbjct 20005 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCG 19946
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| ||||||||||| |||||||| | ||| | || ||||| ||
Sbjct 19945 AGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTATCTTGG 19886
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | ||||| |||| ||||| || || | || || ||||
Sbjct 19885 ATCTTCGACTTGACATTGT--CGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCT 19828
Query 44307 TTCCCGTGAGGGTCTTCACGA 44327
| || || || ||||| ||||
Sbjct 19827 TGCCAGTAAGAGTCTTGACGA 19807
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
||||||||| || || || |||||| ||||||||||| ||| | ||| | ||
Sbjct 20465 CAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATC 20406
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||| |||||| || ||||| || | | |||||| || | || | ||| ||||| ||
Sbjct 20405 CTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATC 20346
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
| ||||| ||| | | | || ||||| | || || || |||| ||||| ||
Sbjct 20345 CTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGT 20286
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| || | ||||| |||||||| |||||
Sbjct 20285 CTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/187 (71%), Gaps = 4/187 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || ||||| || ||||| |||||||||||||| | ||| ||| |||| ||
Sbjct 19713 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 19654
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||||||||||||||| || | || | || ||||| ||
Sbjct 19653 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 19594
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | || ||||| | || || ||||| | || || ||||
Sbjct 19593 ATCTTGCTCTTGACATTGT--CGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCT 19536
Query 44307 TTCCCGT 44313
| || ||
Sbjct 19535 TGCCGGT 19529
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
||||| || || || |||||| |||||||| ||||| | | || | || | || ||
Sbjct 20233 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGC-CATCCTC 20175
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || || || | | |||||| || | || | ||| ||||| |||
Sbjct 20174 CAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTG 20115
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | || || || | ||||| ||||| | || || |||||
Sbjct 20114 GATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTT 20055
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || ||||||||||| || |||||
Sbjct 20054 TCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025
>seq1384
Length=59147
Score = 100 bits (110), Expect = 2e-16
Identities = 137/186 (74%), Gaps = 8/186 (4%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||||| |||||||| |||| ||||| | || | || || |||||||| || || ||
Sbjct 42870 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCG-GC-CATCCTCGAGCTGCTTTCCAGCGAA 42813
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263
||||||||| ||||| || | || | || ||||| ||| ||||| ||| || |
Sbjct 42812 GATCAAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 42753
Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323
|| | || || |||| ||| || ||||| | ||||| |||||||| ||||| || ||
Sbjct 42752 GT--CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTG 42695
Query 44324 ACGAAG 44329
||||||
Sbjct 42694 ACGAAG 42689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359981054874210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |