Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10- 26] 2,130 sequences; 49,411,302 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq762 152 1e-31 seq1384 150 4e-31 seq829 118 3e-21 seq1094 98.7 2e-15 >seq762 Length=84765 Score = 152 bits (168), Expect = 1e-31 Identities = 160/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| || ||||| || ||||| |||||||| ||| || || Sbjct 20028 CAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCTGAT 20087 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||| |||||||| || || ||||| || |||||||| Sbjct 20088 ACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAG 20147 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || ||||| ||||| ||| | || ||||| | || |||| | ||||||||| | Sbjct 20148 AGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTAC-CTTGTCTGATTATAACAT 20206 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 ||| || || || || || ||||| ||| Sbjct 20207 CCAGAAGGAGTCTACTCTCCATCTGGTT 20234 Score = 138 bits (152), Expect = 3e-27 Identities = 150/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || ||||| || || || || ||||| ||||| || ||| || || ||||||| Sbjct 19807 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 19866 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| ||||| || || || || || |||||||| || |||||||| | | Sbjct 19867 ACAATGTCAAGTCGAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 19926 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||||||||| || ||||||||||| | || || ||||||| ||| ||||||| | Sbjct 19927 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGG 19986 Query 178111 AATCAACACTGCATCTTG 178128 | || || || || |||| Sbjct 19987 AGTCCACTCTCCA-CTTG 20003 >seq1384 Length=59147 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 177922 TCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981 |||| | ||||| ||||||||||| ||||| || || ||||||||||| || ||| | Sbjct 42682 TCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCG 42741 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || || || ||||| ||||| |||||||| || ||||| || || ||||||| Sbjct 42742 ATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGC 42801 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| ||||| |||||||| ||||| | |||||| |||| || ||| Sbjct 42802 AACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACA 42861 Query 178102 TCCAAAAAGAATCAACAC 178119 | ||||| | | ||||| Sbjct 42862 TTCAAAAGGTACGAACAC 42879 >seq829 Length=133551 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || || ||||| ||||| || || || || ||||| |||||||| Sbjct 64945 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCC 64886 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || || || ||||| ||||| || ||||||||||| || Sbjct 64885 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 64826 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||||||||| | || || |||| || ||| |||| || || || || || ||| Sbjct 64825 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 64766 Query 178125 CTTGT 178129 || || Sbjct 64765 CTAGT 64761 >seq1094 Length=98106 Score = 98.7 bits (108), Expect = 2e-15 Identities = 186/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGG---CAAATGGCATCTTTGTATGCGATGAAAGGC 214179 |||| ||| ||||| || || || ||| ||| ||||| ||||| |||||||| Sbjct 29609 CCAAGGTTCTTCTGATTACTCTTTCGGTTGCAA---GCATCCTTGTAGAGCATGAAAGGG 29553 Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACC 214239 |||| |||| ||| || | || ||| | ||| || | |||||||| | | | Sbjct 29552 TTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGTC 29493 Query 214240 TTTTTGGCTCTTCCCTCGTTT-TCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTA 214298 || | | ||| ||| | |||||||| ||||| |||| ||||||||| |||||| Sbjct 29492 TTGC-GACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTA 29434 Query 214299 GACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCT 214358 |||||| |||||||||| |||||||||||| | || ||||| ||||| | | Sbjct 29433 AACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTC 29374 Query 214359 GACTCTTTTCATGAAAAGGTCGGAAGTCCA 214388 || | |||||||| || || | | |||| Sbjct 29373 AACACGCTTCATGAAGAGATCTGGAATCCA 29344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203698349423220