Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq762 152 1e-31
seq1384 150 4e-31
seq829 118 3e-21
seq1094 98.7 2e-15
>seq762
Length=84765
Score = 152 bits (168), Expect = 1e-31
Identities = 160/208 (77%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| ||||| || ||||| || ||||| |||||||| ||| || ||
Sbjct 20028 CAGATTTTCGTGAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCTGAT 20087
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| |||||| |||||||| || || ||||| || ||||||||
Sbjct 20088 ACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAG 20147
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|||| || ||||| ||||| ||| | || ||||| | || |||| | ||||||||| |
Sbjct 20148 AGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTAC-CTTGTCTGATTATAACAT 20206
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130
||| || || || || || ||||| |||
Sbjct 20207 CCAGAAGGAGTCTACTCTCCATCTGGTT 20234
Score = 138 bits (152), Expect = 3e-27
Identities = 150/198 (76%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || ||||| || || || || ||||| ||||| || ||| || || |||||||
Sbjct 19807 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 19866
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| ||||| || || || || || |||||||| || |||||||| | |
Sbjct 19867 ACAATGTCAAGTCGAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 19926
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||||||||| || ||||||||||| | || || ||||||| ||| ||||||| |
Sbjct 19927 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAAAAGG 19986
Query 178111 AATCAACACTGCATCTTG 178128
| || || || || ||||
Sbjct 19987 AGTCCACTCTCCA-CTTG 20003
>seq1384
Length=59147
Score = 150 bits (166), Expect = 4e-31
Identities = 152/198 (77%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 177922 TCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981
|||| | ||||| ||||||||||| ||||| || || ||||||||||| || ||| |
Sbjct 42682 TCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCG 42741
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || || || ||||| ||||| |||||||| || ||||| || || |||||||
Sbjct 42742 ATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGACCAGC 42801
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | |||||||| ||||| |||||||| ||||| | |||||| |||| || |||
Sbjct 42802 AACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACA 42861
Query 178102 TCCAAAAAGAATCAACAC 178119
| ||||| | | |||||
Sbjct 42862 TTCAAAAGGTACGAACAC 42879
>seq829
Length=133551
Score = 118 bits (130), Expect = 3e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || || ||||| ||||| || || || || ||||| ||||||||
Sbjct 64945 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCC 64886
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || || || || ||||| ||||| || ||||||||||| ||
Sbjct 64885 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 64826
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||||||||||| | || || |||| || ||| |||| || || || || || |||
Sbjct 64825 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 64766
Query 178125 CTTGT 178129
|| ||
Sbjct 64765 CTAGT 64761
>seq1094
Length=98106
Score = 98.7 bits (108), Expect = 2e-15
Identities = 186/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Minus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGG---CAAATGGCATCTTTGTATGCGATGAAAGGC 214179
|||| ||| ||||| || || || ||| ||| ||||| ||||| ||||||||
Sbjct 29609 CCAAGGTTCTTCTGATTACTCTTTCGGTTGCAA---GCATCCTTGTAGAGCATGAAAGGG 29553
Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACC 214239
|||| |||| ||| || | || ||| | ||| || | |||||||| | | |
Sbjct 29552 TTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGTC 29493
Query 214240 TTTTTGGCTCTTCCCTCGTTT-TCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTA 214298
|| | | ||| ||| | |||||||| ||||| |||| ||||||||| ||||||
Sbjct 29492 TTGC-GACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTA 29434
Query 214299 GACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCT 214358
|||||| |||||||||| |||||||||||| | || ||||| ||||| | |
Sbjct 29433 AACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTC 29374
Query 214359 GACTCTTTTCATGAAAAGGTCGGAAGTCCA 214388
|| | |||||||| || || | | ||||
Sbjct 29373 AACACGCTTCATGAAGAGATCTGGAATCCA 29344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203698349423220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |