Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20secalis_20[genbank_20GCA_5F900074895.1_202016-10-
26] 2,130 sequences; 49,411,302 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq829 131 2e-25
seq762 111 1e-19
seq1384 84.2 2e-11
>seq829
Length=133551
Score = 131 bits (144), Expect = 2e-25
Identities = 154/206 (75%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || ||||||||| ||||| |||||||||
Sbjct 64743 CCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 64802
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || ||||| |||||||||||||| || ||||| |||||||| | ||||
Sbjct 64803 AGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGA 64862
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | ||| ||| ||||| ||
Sbjct 64863 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATAGTATCGGAAGACTCTAC 64921
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || |||||||
Sbjct 64922 CTCTAGGGTAATTGTCTTGCCCGTCA 64947
>seq762
Length=84765
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||| || || |||||||| ||||| || || |||
Sbjct 19731 CCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAG 19672
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| |||| ||||| ||||| | ||||
Sbjct 19671 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGA 19612
Query 41756 ACGCTCTCCTTGTC 41769
| || |||||||||
Sbjct 19611 ATGCCCTCCTTGTC 19598
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| ||||||||||| || || ||||||||| ||||| ||||||
Sbjct 20479 CCTCCGCGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 20420
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || | |||||| || || || || || | ||| ||||| | ||
Sbjct 20419 AAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGG 20360
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| ||| || ||| ||| | | | ||||| |||||| ||
Sbjct 20359 ATACCCTCCTTATCCTGGATCTTGGACTT-GACGTTGTCGATTGTGTCAGACGACTCAAC 20301
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || |||| ||||| ||||| ||||||||
Sbjct 20300 TTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 20253
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||||| || || ||||||||| |||||||| || ||
Sbjct 20251 CCACCACGAAGGCGAAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTATAATCAGAC 20192
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || | |||||| || ||||| || || | ||| ||||| | ||
Sbjct 20191 AAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGG 20132
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| ||| ||| | || || ||| || || || ||
Sbjct 20131 ATACCCTCCTTGTCCTGGATCTTTGACTTGA-CGTTATCAATAGTATCAGATGATTCGAC 20073
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||| ||||| ||||||||||||||
Sbjct 20072 CTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTCACGAAAATCTGCAT 20025
>seq1384
Length=59147
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
|||| |||||||| |||||||| || || || | || ||||||||||| || ||||| |
Sbjct 42870 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 42811
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
||| || || ||||| | ||||| | |||||||||| ||| ||
Sbjct 42810 TCAAACGTTGCTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATCTT 42765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462291691156000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |