Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13 253 2e-62 seq37 84.2 3e-11 >seq13 Length=863668 Score = 253 bits (280), Expect = 2e-62 Identities = 489/717 (68%), Gaps = 16/717 (2%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 |||||||| || || | |||| | | || || || |||| ||| ||||||| || | Sbjct 288166 TCAAACTCATCACCGTAGACATCAGCAAGGCCGGGGCACTCATTCGGGCACATCAGCGTC 288107 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 ||||| |||| | | || || ||||| ||||||||||| |||||||| || | || Sbjct 288106 CACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCCAAGAAG 288047 Query 54071 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 54130 || || | | | | |||||| || || ||||||| ||||| |||||| | | Sbjct 288046 AGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTCTTTCGCAGATCTAGGAACTCAAAC 287987 Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 | ||| || ||||| ||||| | || |||| | | |||||||| ||||| || || Sbjct 287986 ACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAGGCGCCAGGCCGCTTGTTACCACCT 287927 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 ||||| | ||| | ||| |||||||| | || | || ||| |||| |||||| || ||| Sbjct 287926 TGATCGACGTAACGAGCCGTGTTATTGAAGACACGCAGCATGGGAACAATACCGTTAGAT 287867 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGAC 54308 | ||| || || || | ||| || || ||||||| || | |||| || | Sbjct 287866 GTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCACGGATGCGGTGAACATTG--AGGC 287809 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || ||||| || || || | || ||| || || |||||||| || |||| Sbjct 287808 CAATGCCTCCAGCCATCTTTGAAATCATAGCACATGTCTTCAAGGTATCATAAATTCCCT 287749 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | || ||||| ||| |||||| | || ||||| ||||| ||| | | |||| Sbjct 287748 CGATGCTATCGTCCTTCATGTCGACTAAGAAACAAGACGACATCTGGGGTTGCGGTGTTC 287689 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | ||||| || | || |||||||| || || || |||| || | || ||||| | Sbjct 287688 CGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAATTTAAGGGACATGAGGTTGTAGG 287629 Query 54489 TCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 |||||| | || || || || |||| || || || || ||||| | | Sbjct 287628 TCTCGAGGACCCTCTCGATGTCGTCTCCCCAGATG----CCGACCGCCACGCGCATGATC 287573 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 |||||||||||||| ||||| |||||| ||| ||||| || | |||||| ||||| Sbjct 287572 ATGTGCTGAGGTCTCTCAACAATCTTGCCGTTGATTTTGAGAAGGTAGGACCGCTCCAAC 287513 Query 54605 GTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 || || || |||||||| | ||| ||||| || || ||||| | ||| | |||| Sbjct 287512 GTCTTGAAGCCAAAATATTGGTAGTTGAAA--TCGCGGTCGTATACAATGGCAGAGT 287458 >seq37 Length=418716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 219/332 (66%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| |||||||| ||||| ||| | | | ||||| | || || ||||| Sbjct 51283 GTCTCAATAGCATTGAAGAGGTAGGTCCGCTGAGCGGGCTCTTTGATGTAGGTGTCAATA 51224 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | |||| || | || || |||||||| || || || || || ||||| || || Sbjct 51223 AGAAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCAC 51164 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | |||||||| ||||| || || || ||| || || | | || || || || || Sbjct 51163 CGAGCCTCGGGGATCTGAACCTCGCCACTAAAACGCTCCACAAGGTTCTCGTTGACAATG 51104 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT-- 24593 || ||| ||| ||||| || |||| | || ||||||||||| || | || | Sbjct 51103 CCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATAAAATATTTCTCATCCTCATTG 51044 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 || | || ||||| || | ||||| || || | || | || || | ||||| || Sbjct 51043 ATTCGGTTGTTCCAGTCGTGCATATCCTTGGAGAGGTCAATCTCCTCAGCAGTCCAGAAG 50984 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || || || ||||| || ||||| | |||||| Sbjct 50983 GAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 50952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719826256720