Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq37 188 7e-43 seq92 131 2e-25 seq25 125 7e-24 seq1 111 2e-19 >seq37 Length=418716 Score = 188 bits (208), Expect = 7e-43 Identities = 315/450 (70%), Gaps = 4/450 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| || ||||| ||| ||||| || | | || |||| | | ||||| Sbjct 51355 AGAAGGCTGACTGGGCCCTGAAGTGGATTAGCGATCGCAACTCCACCTTTGCCCAGCGCT 51414 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || | ||||| || || || ||||| ||||||| || |||||| | || || | Sbjct 51415 TGATTGCCTTTGCCGCTGTGGAGGGTATCTTCTTCAGTGGTGCTTTCGCATCTATCTTCT 51474 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || || || ||||| |||||||||||| |||||||||||||||| | | Sbjct 51475 GGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCCCGTG 51534 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| ||| |||||||||||| |||||||| || || | | ||||| | Sbjct 51535 ACGAGGGTCTTCATACCGACTTTGCCTGCCTGCTGTTCTCTCACCTGAAGAACCGACCCA 51594 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 | || | ||| || | || || ||| || ||| || ||||| ||||| | Sbjct 51595 GTAAGGAGGTCGTGGAGGCGGTCATCGTCGATGCCGTCAAGATTGAGCAAGAGTTCCTGA 51654 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || |||||||| ||||| |||||| || | || || || | |||| ||||||||| Sbjct 51655 CAGAGGCGCTGCC-GTGCGCTCTGCTCGGCATGAA-CGCCAACCTGATGAAGCAATACAT 51712 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||| || || ||| | ||||| ||| |||| | ||| |||| | | | Sbjct 51713 CGAGTTTGTTGCTGACCGTCTGCTCGTCGCTCTGGGTAATGAGAAGGTCTACCGCTCTTC 51772 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||||| | ||||| ||| | |||||| Sbjct 51773 CAACCCGTTCGACTTCATGGAGAACATCTC 51802 Score = 152 bits (168), Expect = 5e-32 Identities = 205/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||| | |||||| | ||||| Sbjct 50952 ATCTGGCAAATGTACAAGAAGGCTGAAGCCTCCTTCTGGACTGCTGAGGAGATTGACCTC 51011 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | | ||||||| | || | || || | ||| |||| ||| Sbjct 51012 TCCAAGGATATGCACGACTGGAACAACCGAATCAATGAGGATGAGAAATATTTTATCTCT 51071 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| || |||||| || ||||| ||||||||||| || || |||||| Sbjct 51072 CACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTTGTGGAGCGT 51131 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | ||||| ||| | ||||||| |||||||| |||||||| |||||| ||| Sbjct 51132 TTTAGTGGCGAGGTTCAGATCCCCGAGGCTCGGTGCTTTTACGGCTTCCAGATCATGATG 51191 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || || || ||||| ||| Sbjct 51192 GAGAACATTCACTCTGAGACATACTCTCTTCTTATTGACACCTAC 51236 >seq92 Length=114681 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| || || |||||| |||| || || | | | Sbjct 39579 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTAGC 39520 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 39519 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 39460 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | || ||||| || |||||| Sbjct 39459 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTTTCGGATTACAAC 39400 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| ||| || || || ||| |||| Sbjct 39399 ATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCG 39365 >seq25 Length=549874 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || || |||||||| || || |||||||| | || || ||| | | Sbjct 482148 ATGCAAATATTTGTGAAGACGCTCACTGGAAAGACCATCACTCTGGAGGTGGAATCTTCA 482089 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| ||||| | ||||| ||||| ||||| |||||||| Sbjct 482088 GATACCATCGACAATGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 482029 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || || |||||||| || | || || || | ||||||||| Sbjct 482028 CAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGACGTACGCTAAGCGACTACAAT 481969 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || |||||| | || |||| ||||| | |||||| | || || Sbjct 481968 ATTCAAAAGGAGTCGACATTGCACCTAGTTCTCCGCTTGCGTGGTGG 481922 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || |||||| | || || ||| | | Sbjct 481920 ATGCAAATCTTCGTGAAGACATTGACAGGGAAGACGATCACCCTGGAAGTGGAATCGTCA 481861 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||| |||||| ||||||| Sbjct 481860 GATACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 481801 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || || |||||||| || | |||||| || | ||||||||| Sbjct 481800 CAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACTCTGAGTGACTACAAC 481741 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| ||| | || ||||||||||| Sbjct 481740 ATTCAGAAAGAGTCGACCCTGCATCTAGT 481712 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || ||||| || || || |||||| | || || || | Sbjct 482672 AAGATGCAGATCTTTGTCAAGACTCTCACCGGTAAGACGATCACCTTGGAGGTGGAGTCT 482613 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | |||| | ||| || || | || || || ||||| || | || Sbjct 482612 TCCGACACAATCGACAACG-TAAAGTCGAAGATCCAGGATAAGGAAGGCATTCCTCCCGA 482554 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| ||||| || |||| || ||||||| ||| || Sbjct 482553 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCAGCGATTA 482494 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||||| | || || ||||| ||| Sbjct 482493 CAACATCCAGAAGGAGTCTACCCTCCATCTCGTG 482460 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| ||||| | ||||| || || || || |||| || || | |||||| | Sbjct 482366 TCGTCAAAACCTTGACGGGAAAGACGATTACGCTCGAGGTTGAGTCATCCGACACGATCG 482307 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | ||| || || | || ||||| ||||| || | |||||||| || || Sbjct 482306 ACAACG-TAAAGTCGAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCAGCAGCGCCTG 482248 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | || ||||| ||||| || |||| || ||||| | |||||||||||| |||||| Sbjct 482247 ATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACCCTGAGCGACTACAACATTCAGAAG 482188 Query 40879 GAGGCCACGCTGCATCTAGTG 40899 || |||| || || || ||| Sbjct 482187 GAATCCACCCTCCACCTTGTG 482167 >seq1 Length=1779776 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || ||||| || || ||||||||||| ||||| || |||| ||||| || | | Sbjct 1522472 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAGGTCGAGTCCTCGG 1522531 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | | || || || | ||||| ||||||||||| | ||||||| Sbjct 1522532 ACACGATCGACAATGTAAAAAGCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGC 1522591 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || |||| ||| ||||| ||||| || |||| || || ||| ||||||||||| Sbjct 1522592 AGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACACTCTCCGACTACAACA 1522651 Query 40871 TCCAGAAGG 40879 |||| |||| Sbjct 1522652 TCCAAAAGG 1522660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217660782640