Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq25 95.1 2e-14 seq28 84.2 3e-11 >seq25 Length=549874 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || || || ||| | ||| | ||| | Sbjct 482148 ATGCAAATATTTGTGAAGACGCTCACTGGAAAGACCATCACTCTGGAGGTGGAATCTTCA 482089 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || ||||| || || || || ||||| || || || || Sbjct 482088 GATACCATCGACAATGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 482029 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || || || | |||||| | || || || || || ||| Sbjct 482028 CAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGACGTACGCTAAGCGACTACAAT 481969 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || || ||||| | ||| | || || || |||||||| Sbjct 481968 ATTCAAAAGGAGTCGACATTGCACCTAGTTCTCCGCTTGCGTGGTGGTAT 481919 >seq28 Length=523191 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/183 (74%), Gaps = 11/183 (6%) Strand=Plus/Plus Query 228319 attaaattaaatattagttcatgtaatataaaaaatactaattttataattaatttagat 228378 ||| || || ||| || || | ||| | |||||||| || |||||| |||||||| || Sbjct 519500 ATTTAAATATATAATATTT--TTTAAAAAAAAAAATATTATATTTATATTTAATTTA-AT 519556 Query 228379 aatttGAAAGAATTAGATATATCTAGAAATTTTAATATAAA-TATTTCATCATTACCAAA 228437 ||| | ||| || || ||| || || |||||| || ||||| || || || |||| ||| Sbjct 519557 AATAT-AAATAAATA-ATAAAT-TA-AAATTTAAAAATAAAATAATTAAT-ATTAAAAAA 519611 Query 228438 ATCATTAATCAAATTAAATATTAGGACATGTTATATAAAAAATACTAATTTTATAATTAA 228497 || ||||| ||| |||| || | | ||||||| ||||| ||||||||||| || Sbjct 519612 ATATTTAATATAATAAAATTTTTTAAATTATTATATATAAAATTATAATTTTATAA--AA 519669 Query 228498 TTT 228500 ||| Sbjct 519670 TTT 519672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453743075200