Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq25 127 2e-24 seq1 116 3e-21 seq92 98.7 9e-16 >seq25 Length=549874 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || || |||||||||||||| | || || ||||||||||| Sbjct 482467 TGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCCTCGAGCTGC 482526 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| ||||||||||| |||||||| ||||| ||||| || || || Sbjct 482527 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTC 482586 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| ||||| | ||| ||||| | ||| | ||| || ||||| Sbjct 482587 GACTTTACGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTCTTACCGGTG 482646 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| |||||||| Sbjct 482647 AGAGTCTTGACAAAGATCTGCAT 482669 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| ||||||||||| || |||| ||||||| |||||| ||||| || ||| Sbjct 481724 GTCGACTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCCAGCTGCTTACCA 481783 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||||||||| || || || || || || ||||||||||| || || || Sbjct 481784 GCAAAGATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTC 481843 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | || || || | ||| | ||| || || |||| || Sbjct 481844 ACATTGTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTCCCTGTCAATGTC 481903 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 481904 TTCACGAAGATTTGCAT 481920 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| ||||| |||||||| ||||| ||||| | || || |||||| ||||| Sbjct 481945 GTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTTAGCGTACGTCCATCCTCCAGCTG 482004 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||||||||| ||||| || ||||| || ||||||||||| ||||| Sbjct 482005 CTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATTTT 482064 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||| || | || ||||| | || | || || || || Sbjct 482065 GCTCTTCACATTGTCGATGGTATCTGAAGATTCCACCTCCAGAGTGATGGTCTTTCCAGT 482124 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| || |||||| Sbjct 482125 GAGCGTCTTCACAAATATTTGCATG 482149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || || || || ||||||||||| ||||||| || || ||||| Sbjct 482167 CACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTC 482226 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| | || || |||||||| |||||||| ||||| || || || Sbjct 482227 GAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTG 482286 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| ||||||| || | ||| || Sbjct 482287 GATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTCTT 482346 Query 118709 GCCGGTCAGAGTTTTTAC 118726 || |||| ||||| || Sbjct 482347 TCCCGTCAAGGTTTTGAC 482364 >seq1 Length=1779776 Score = 116 bits (128), Expect = 3e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| |||||||| ||| | || || ||||||||||| || |||||| |||| Sbjct 1522658 TTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATA 1522599 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| || ||||| |||||||||||||| || || ||| || | ||| Sbjct 1522598 AGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGTCG 1522539 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||||| || | || ||||| || || || || || || Sbjct 1522538 ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAG 1522479 Query 118731 ATCTGCA 118737 ||||||| Sbjct 1522478 ATCTGCA 1522472 >seq92 Length=114681 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || ||| || || ||||||||||| | || || ||| Sbjct 39367 CAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATC 39426 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 39427 CTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 39486 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||||| ||| | || Sbjct 39487 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGT 39546 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || ||||| || || ||||||||| Sbjct 39547 CTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 39580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829136333388