Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq92 114 1e-20 seq25 114 1e-20 >seq1 Length=1779776 Score = 118 bits (130), Expect = 1e-21 Identities = 142/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 ||||||| || ||||| || | || ||||| |||| || |||||||| |||||||| | Sbjct 1522660 CCTTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 1522601 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT--TTGTTTGAGCGT 43111 | || ||||||||||| | || | || |||||||||| ||| || || || | || Sbjct 1522600 TAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGT 1522541 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 || | |||||| || || || |||| ||| ||||| |||||||| || ||||| || Sbjct 1522540 CG--ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGAC 1522483 Query 43172 AAAGATTTGCA 43182 ||||| |||| Sbjct 1522482 GAAGATCTGCA 1522472 >seq92 Length=114681 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | ||||||||||| || || |||||||| | || || || | Sbjct 39364 ACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCC 39423 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 39424 ATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 39483 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||||| || ||||| |||| ||||| Sbjct 39484 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGAT 39543 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || || || || ||||| ||||| Sbjct 39544 AGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 39579 >seq25 Length=549874 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||||||| |||||||||||||||||| || || || || | || || |||||| Sbjct 481946 TGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTTAGCGTACGTCCATCCTCCAGCTGC 482005 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 |||||||| || ||||| || |||||||| | || | | |||||||||| |||||| Sbjct 482006 TTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATTTTG 482065 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | | | | || || |||||||| || | |||||||| || || || Sbjct 482066 CTCTTCACATTGTCGATGGTATCTGAAGATTCCACCTCCAGAGTGATGGTCTTTCCAGTG 482125 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| ||||| |||||||| Sbjct 482126 AGCGTCTTCACAAATATTTGCAT 482148 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || || || |||| || |||||||| || ||||| Sbjct 482478 CTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 482537 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || ||||| ||| ||| || || | ||| Sbjct 482538 GATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTCGACTTTA-CGT 482596 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||| || || || || || ||||| | Sbjct 482597 TGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGA 482656 Query 43171 CAAAGATTTGCATTTTTACG 43190 ||||||| ||||| || ||| Sbjct 482657 CAAAGATCTGCATCTTGACG 482676 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||| ||| |||||| ||| | || || |||||||||||||| || Sbjct 481729 CTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCCAGCTGCTTACCAGCAAA 481788 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || || ||||| | || | | |||||||||| ||| || || | | Sbjct 481789 GATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACATT 481848 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || ||||||||| || | ||||| || || || || | ||||| || Sbjct 481849 GTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTCCCTGTCAATGTCTTCAC 481908 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 481909 GAAGATTTGCAT 481920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815891694920