Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq92 122 6e-23 seq25 114 8e-21 seq1 113 3e-20 >seq92 Length=114681 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||| ||||| | || || || ||||| |||||||| || || Sbjct 39353 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAA 39412 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | ||||||||| || || || || ||||||||||| ||| Sbjct 39413 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 39472 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | ||| | || || || Sbjct 39473 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACC 39532 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || ||||| ||||| || ||||||||||| Sbjct 39533 TCGAGGGTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 39579 >seq25 Length=549874 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||| || || | ||| || ||||| |||||||| ||| Sbjct 482443 CCGCCACGAAGACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 482502 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || |||||||||||| || Sbjct 482503 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 482562 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||||| | | | || | |||| || || || Sbjct 482563 ATGCCTTCCTTATCCTGGATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCCACC 482622 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| || || ||||||||||| || ||||||||||||||| Sbjct 482623 TCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCATC 482670 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| ||| || | || |||| |||||| || || || Sbjct 481730 TCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAG 481789 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| || || ||||| ||| | | ||||||||| ||||| ||| | || | Sbjct 481790 ATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTG 481849 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | |||||| || |||| ||||| || || || || | || ||||| Sbjct 481850 TCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTCCCTGTCAATGTCTTCACG 481909 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 481910 AAGATTTGCAT 481920 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || ||| ||||| |||||||||||| ||| ||| |||| Sbjct 482165 AGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCC 482224 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || ||||| || |||||||||||| || | || || || || Sbjct 482225 TCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 482284 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | | |||| |||| || || || || | ||| || || Sbjct 482285 TGGATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTC 482344 Query 34358 TTGCCGGTGAGAGTTTTCAC 34377 || || || | ||||| || Sbjct 482345 TTTCCCGTCAAGGTTTTGAC 482364 >seq1 Length=1779776 Score = 113 bits (124), Expect = 3e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 || || |||||||||||||| || ||| |||| || | ||||||||| ||||| || Sbjct 1522658 TTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATA 1522599 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| || | || ||||||||| ||||| |||| || | | Sbjct 1522598 AGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGTCG 1522539 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 |||| || | || ||||| || | ||| ||||| ||||| ||||| || || || ||| Sbjct 1522538 ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAG 1522479 Query 34382 ATCTGCA 34388 ||||||| Sbjct 1522478 ATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071058951840