Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 331 8e-86 seq37 127 2e-24 seq25 116 3e-21 seq1 86.0 6e-12 >seq13 Length=863668 Score = 331 bits (366), Expect = 8e-86 Identities = 658/965 (68%), Gaps = 7/965 (1%) Strand=Plus/Minus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||| || || || || ||||| || || || || ||| || | ||||| | || || Sbjct 288413 GGCCATAGATGCTAGGTTGCAAACAGCAACTTCATCTGGGGCTGAATACTCGATGATCTC 288354 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG-C 23138 ||| || |||||| | || ||||| ||||| |||||||||| || |||||| | Sbjct 288353 GGTGCAGAGATTGGAGCTGCGGATTGTGCCTAAATTCTTCTGGTTGCTCTTGCGATTGGC 288294 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 | || ||||||||||||||| | || |||| || || ||| | |||| ||| || Sbjct 288293 ATGA-TCCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCTTCGAGGATGGCAT 288235 Query 23199 GCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGG 23257 ||| | ||||||| | | | || || | | || || |||| ||| ||| | Sbjct 288234 ACCAGAGCTTCTGAGCCTTTAT-CTTCTGGCGGCCGCGACCCTCAGCCTCATACGTTTCG 288176 Query 23258 TACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACA 23316 || | || ||||| || ||||||| ||| || || |||||||| | | |||| || Sbjct 288175 TAGAGAGCCTCAAACTCATCACCGTAGACA-TCAGCAAGGCCGGGGCACTCATTCGGGCA 288117 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 ||| || ||||| || ||||| || || |||| || ||||| || ||||| || Sbjct 288116 CATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGATCAGGGATCCAAAG 288057 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 || |||| || || || ||||| || ||||| || || |||||| || ||| | Sbjct 288056 GGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTCTTTCGCAGATCTAG 287997 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 || || ||||| |||| ||||| || || || || | ||| || ||||| || | ||| Sbjct 287996 GAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAGGCGCCAGGCCGCTT 287937 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 || || || |||||||||||||| |||||||| ||| | || | ||||| || || | Sbjct 287936 GTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACACGCAGCATGGGAACAAT 287877 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAAC 23616 |||||| || | ||| || || | || || | || || | | |||||| Sbjct 287876 ACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCACGGATGCGGTGAAC 287817 Query 23617 GTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTA 23676 | || || |||||||| || || || ||||| || ||| |||| || || || Sbjct 287816 ATTGAGGCCAATGCCTCCAGCCATCTTTGAAATCATAGCACATGTCTTCAAGGTATCATA 287757 Query 23677 GATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 || ||||||||||| || || || | |||| |||||||| || ||||| || | || Sbjct 287756 AATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAACAAGACGACATCTGGGGTTG 287697 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 || || |||| ||| |||||||| || || || ||| || | ||||| || Sbjct 287696 CGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAATTTAAGGGACATGAG 287637 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 ||||| || |||| | | || ||||| ||||| || |||| || |||||||| Sbjct 287636 GTTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCCCCAGATGCCGACCGCCACGCGCAT 287577 Query 23857 CATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTG 23916 ||||||| ||||||||||| || | |||||| ||||||| || || || || | Sbjct 287576 GATCATGTGCTGAGGTCTCTCAACAATCTTGCCGTTGATTTTGAGAAGGTAGGACCGCTC 287517 Query 23917 CATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || ||| || || |||||||| | ||||| || || || |||| || ||||| | | | Sbjct 287516 CAACGTCTTGAAGCCAAAATATTGGTAGTTGAAATCGCGGTCGTATACAATGGCAG-AGT 287458 Query 23977 CAAAC 23981 ||||| Sbjct 287457 CAAAC 287453 Score = 129 bits (142), Expect = 5e-25 Identities = 360/546 (66%), Gaps = 20/546 (4%) Strand=Plus/Minus Query 22133 GCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAA 22192 |||||| || || || || || |||||||| ||||||||||| | |||||| | Sbjct 289297 GCGGCCTGT---GTTCGGAGGTAGTACATGCCGGTCTTCAGACCGAGTTTCCACCCAGCG 289241 Query 22193 AAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGA 22252 || || || || | ||| || | ||| ||||| | ||||| |||||| Sbjct 289240 AAGTGCATGCTTGTGATTTTGCCCATGGTAGGCTCTCTCATGTGGATATTGAGAGACTGA 289181 Query 22253 CTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATT 22312 |||||| ||||| || || ||||| || ||||| | | | ||| ||| || || Sbjct 289180 GACTGATCAATAAATGCACCACGATCAGCAGCCATTTGGACAACTGTGCGCTGGGAAATC 289121 Query 22313 TCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGA 22370 ||||| ||||| ||||| ||| | ||| ||| ||||| | | | || |||||| Sbjct 289120 TCCCAGACGGTTTTGTATAGTGCCTTGACCTCAGTGGGTAT--ACTAGGAATATTCTGGA 289063 Query 22371 CGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGG 22430 ||| ||||| | | || || ||| || || | || ||||| || | | Sbjct 289062 TGGAACCGTTTTCGGCAATAATACGATTCTTCATATTGTCAGACCACAGTCCCAAATCCA 289003 Query 22431 TCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTT 22490 | ||| |||| || | || || || || |||||||| | ||||||||| || Sbjct 289002 CTAGATCCTTGAGTAGCCAGGGATTGACGACCTGGAACTCGCCTGCCAAGACGCGACGAG 288943 Query 22491 GGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCG 22550 ||||||||| || ||| | ||||| || | || ||||| |||| ||||| | ||| Sbjct 288942 AGTAAATGTTTGAAGTGTAAGGTTCAAAGCACTCGTTGTTACCCAAGATCTGCGAGGTGC 288883 Query 22551 AAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTT 22608 ||| || ||||| || |||| || || || | | || |||| |||| | | Sbjct 288882 TAGCAGTTGGCATAGGAGCCATGAGAAGACTATTGCGTACACCATGCTGCTTGA---TCT 288826 Query 22609 ACTCTT---GAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 ||||| ||||| | ||||||||| ||||| || || || |||| |||||||||| Sbjct 288825 GCTCTTTGAGAGCAGC--CCAGTCCCAAAGATCAGAGGGGGTAACAT---CCCACATATC 288771 Query 22666 GTATTG 22671 ||| || Sbjct 288770 GTACTG 288765 >seq37 Length=418716 Score = 127 bits (140), Expect = 2e-24 Identities = 326/487 (67%), Gaps = 16/487 (3%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGAG 57973 |||||||| || ||| | | || ||||| | | ||| || |||| || ||| || | Sbjct 51354 AAGAAGGCTGACTGGGCCCTGAAGTGGATTAGCGATCGCAACT-CCACCTTTGCCCAGCG 51412 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATAT 58032 | || || || ||||| || || ||||| ||||| || ||||| || | || | Sbjct 51413 CTTGATTGCCTTTGCCGCTGTGGAGGGTATCTTCTTCAGTGGT-GCTTTCGCATCTATCT 51471 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| | ||||| || || |||||||| |||||||| || ||||||| | || || | Sbjct 51472 TCTGGCTCAAGAAGCGTGGTCTGATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCCC 51531 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 | ||||||||||| ||||| || ||||| ||||| ||| ||||||| | | ||| Sbjct 51532 GTGACGAGGGTCTTCATACCGACTTTGCCTGCCTGCTGTTCTCTCACCT----GAAGAAC 51587 Query 58153 CGACGCGGGATCG-CATCTTGGA---CATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 |||| | | | | || |||| | ||| ||| || ||| ||| || | ||| Sbjct 51588 CGACCCAGTAAGGAGGTCGTGGAGGCGGTCATCGTCGATGCCGTCAAGATTGAGCAAGAG 51647 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | || || || || ||| || ||||||| |||||| | ||||| | Sbjct 51648 TTCCTGACAGAGGCGCTGCCGTGCGCTCTGCTCGGCATGAACGCCAACCTGATGAAGCAA 51707 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATT--GGAGAGCGTCATTACA 58326 ||||| ||||||||||| ||| | || | ||| ||| | |||| ||| ||| Sbjct 51708 TACATCGAGTTTGTTGCTGACCGTCTGCTCGTCGCTCTGGGTAATGAGAAGGTC--TACC 51765 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 | | || ||||| || || ||| | |||||||||| |||||||| ||||| | Sbjct 51766 GCTCTTCCAACCCGTTCGACTTCATGGAGAACATCTCGCTCGGTGGCAAGACCAACTTCT 51825 Query 58387 TCGAAAA 58393 | || || Sbjct 51826 TTGAGAA 51832 Score = 86.0 bits (94), Expect = 6e-12 Identities = 195/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| ||||| || || ||||| | || || | ||||| Sbjct 50952 ATCTGGCAAATGTACAAGAAGGCTGAAGCCTCCTTCTGGACTGCTGAGGAGATTGACCTC 51011 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||| || ||| ||| | || |||| || ||||| | ||||||| Sbjct 51012 TCCAAGGATATGCACGACTGGAACAACCGAATCAATGAGGATGAGAAATATTTTATCTCT 51071 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | |||| || || ||||| || ||||| ||||| |||||||| | || || | Sbjct 51072 CACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTTGTGGAGCGT 51131 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||| || || || | | ||||| | ||||||||||| || || | || Sbjct 51132 TTTAGTGGCGAGGTTCAGATCCCCGAGGCTCGGTGCTTTTACGGCTTCCAGATCATGATG 51191 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || ||| | || || || | || || || || || || || ||| | || || Sbjct 51192 GAGAACATTCACTCTGAGACATACTCTCTTCTTATTGACACCTACATCAAAGA 51244 >seq25 Length=549874 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || |||||||| || || || ||||||||| | || || || | Sbjct 482672 AAGATGCAGATCTTTGTCAAGACTCTCACCGGTAAGACGATCACCTTGGAGGTGGAGTCT 482613 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || || || ||| ||||||||| | || |||||| Sbjct 482612 TCCGACACAATCGACAACGTAAAGTCGAAGATCCAGGATAAGGAAGGCATTCCTCCCGAC 482553 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| || | |||||||| Sbjct 482552 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCAGCGATTAC 482493 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || || ||||| || || | || | ||||||| Sbjct 482492 AACATCCAGAAGGAGTCTACCCTCCATCTCGTGCTCCGTCTTCGTGGCGGTA 482441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| || || |||| || || ||||| || |||| ||||| | ||||||| ||| Sbjct 482366 TCGTCAAAACCTTGACGGGAAAGACGATTACGCTCGAGGTTGAGTCATCCGACACGATCG 482307 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | || || || || ||| || |||||| | || |||||||||||||| || | Sbjct 482306 ACAACGTAAAGTCGAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCAGCAGCGCCTGA 482247 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | || |||||||| ||| | || ||| || ||||||| || |||||||| || | Sbjct 482246 TTTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACCCTGAGCGACTACAACATTCAGAAGG 482187 Query 31383 AATCGACTCTTCATCTGGTACT 31404 |||| || || || || || || Sbjct 482186 AATCCACCCTCCACCTTGTGCT 482165 >seq1 Length=1779776 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| || ||||| ||||| || || ||||| || || || |||| || || | || | Sbjct 1522472 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAGGTCGAGTCCTCGG 1522531 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 ||| |||| | || ||| | || ||||||||| ||| | || || ||||||| Sbjct 1522532 ACACGATCGACAATGTAAAAAGCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGC 1522591 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||| || ||||||||||| ||| | || ||| Sbjct 1522592 AGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGAC 1522626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765068272880