Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 242 5e-59 seq37 86.0 8e-12 >seq13 Length=863668 Score = 242 bits (268), Expect = 5e-59 Identities = 462/676 (68%), Gaps = 16/676 (2%) Strand=Plus/Minus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || || |||| ||| ||||||| || |||||| |||| | | || || ||||| ||| Sbjct 288133 GGGCACTCATTCGGGCACATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAG 288074 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 |||||||| |||||||| || | || || || | | | | |||||| || || | Sbjct 288073 AGATCAGGGATCCAAAGGGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGA 288014 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||| ||||| |||||| | | | ||| || ||||| ||||| | || ||||| Sbjct 288013 TTCTTTCGCAGATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGGCG 287954 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | |||||||| ||||| || || ||||| | ||| | ||| |||||||| | || Sbjct 287953 AAGGCGCCAGGCCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACA 287894 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | || ||| |||| ||||||||| ||| |||| || || || | ||| || || || Sbjct 287893 CGCAGCATGGGAACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTG 287834 Query 63522 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 ||||| || | |||| || || || || || ||||| || || || | || | Sbjct 287833 GCACGGATGCGGTGAACATTG--AGGCCAATGCCTCCAGCCATCTTTGAAATCATAGCAC 287776 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 || || || || ||||| || || || |||||||| || |||||| | || |||| Sbjct 287775 ATGTCTTCAAGGTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAAC 287716 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | ||||| ||| | | | ||||| ||||| || | || |||||||| || || | Sbjct 287715 AAGACGACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGA 287656 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGA 63755 | |||| || | || ||||| ||||| | | || || || || || Sbjct 287655 AGAATTTAAGGGACATGAGGTTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCCCCAGA 287596 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || || || || || ||||| | ||||||||||||||| |||||||| ||| ||| Sbjct 287595 TG----CCGACCGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATCTTGCCGTTG 287540 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 63873 ||||| | | |||||| ||||| || || || |||||||| | ||| ||||| | Sbjct 287539 ATTTTGAGAAGGTAGGACCGCTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGAAA--T 287482 Query 63874 CTCGTTCGTAAATAAT 63889 | || ||||| | ||| Sbjct 287481 CGCGGTCGTATACAAT 287466 >seq37 Length=418716 Score = 86.0 bits (94), Expect = 8e-12 Identities = 196/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||| | || || || || | |||| || | || || |||||||| || || Sbjct 51244 TCTTTGATGTAGGTGTCAATAAGAAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATG 51185 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 ||||| || ||||| || || | |||||||| ||||| || || || ||| || || Sbjct 51184 ATCTGGAAGCCGTAAAAGCACCGAGCCTCGGGGATCTGAACCTCGCCACTAAAACGCTCC 51125 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 | | || || || || || |||||| ||| ||||| || |||| | || ||| Sbjct 51124 ACAAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATA 51065 Query 34023 AAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCC 34079 |||||||| || | || | || | || ||||| || | ||||| || || | || Sbjct 51064 AAATATTTCTCATCCTCATTGATTCGGTTGTTCCAGTCGTGCATATCCTTGGAGAGGTCA 51005 Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | || || | ||||| || || || || ||||| || ||||| | |||||| Sbjct 51004 ATCTCCTCAGCAGTCCAGAAGGAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 50952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815718419920