Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13 235 7e-57 seq37 84.2 3e-11 >seq13 Length=863668 Score = 235 bits (260), Expect = 7e-57 Identities = 640/964 (66%), Gaps = 28/964 (3%) Strand=Plus/Minus Query 65741 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 65800 |||||| || || ||||| || || |||| | | | ||| | || ||||| ||||| Sbjct 288407 AGATGCTAGGTTGCAAACAGCAACTTCATCTGGGGCTGAATACTCGATGATCTCGGTGCA 288348 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 65859 ||||| | ||| || |||||||| | || || ||||| || || | || Sbjct 288347 GAGATTGGAGCTGCGGATTGTGCCTAAATTCTTCTGGTTGCTCTTGCGATTGGCATG-AT 288289 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 |||| || || ||||| || | || ||||| |||||| ||| | || || | ||||| Sbjct 288288 CCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCTTCGAGGATGGCATACCAGA 288229 Query 65920 CGACTC-GAGCCTTTAT--TATAGATTT-GTATCTCTTTTC-TCTTTCGTATAGTGTATA 65974 | || |||||||||| | | | | | || | || | ||| | || | | Sbjct 288228 -GCTTCTGAGCCTTTATCTTCTGGCGGCCGCGACCCTCAGCCTCATACGTTTCGT--AGA 288172 Query 65975 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACAT 66034 | | || ||||| || || | |||| | | || || || |||| ||| ||||| Sbjct 288171 GAGCC--TCAAACTCATCACCGTAGACATCAGCAAGGCCGGGGCACTCATTCGGGCACAT 288114 Query 66035 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 66094 || || |||||| |||| | | || || ||||| ||||||||||| |||||||| || Sbjct 288113 CAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGC 288054 Query 66095 TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154 | || | || | | | | |||||| || || ||||||| ||||| ||||| Sbjct 288053 CAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTCTTTCGCAGATCTAGGAA 287994 Query 66155 CGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 66214 | | | | ||| | ||||| ||||| | || ||||| | | |||||||| ||||| Sbjct 287993 CTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAGGCGCCAGGCCGCTTGTT 287934 Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 || || ||||| | ||| | ||| |||||||| | || | || ||| |||| |||||| Sbjct 287933 ACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACACGCAGCATGGGAACAATACC 287874 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATT 66332 || |||||||| || || || | ||| || || | ||||| || | ||| Sbjct 287873 GTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCACGGATGCGGTGAACATT 287814 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 66392 | || || || || || ||||| || || || | || ||| || || |||||||| Sbjct 287813 G--AGGCCAATGCCTCCAGCCATCTTTGAAATCATAGCACATGTCTTCAAGGTATCATAA 287756 Query 66393 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 || ||||| || ||||| ||| |||||| | || ||||| ||||| ||| | | Sbjct 287755 ATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAACAAGACGACATCTGGGGTTGC 287696 Query 66453 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 ||||| ||||| || | || |||||||| || || || |||| || | || Sbjct 287695 GGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAATTTAAGGGACATGAGG 287636 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACG 66568 ||||| ||||| | | || || || || |||| || || || || || Sbjct 287635 TTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCCCCAGATG----CCGACCGCCACGCG 287580 Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 66628 ||| | ||||||||||||||| ||||| |||||| ||| ||||| | | |||||| Sbjct 287579 CATGATCATGTGCTGAGGTCTCTCAACAATCTTGCCGTTGATTTTGAGAAGGTAGGACCG 287520 Query 66629 TTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACC 66686 ||||| || || || |||||||| | ||| ||||| || || ||||| | ||| | Sbjct 287519 CTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGAAA--TCGCGGTCGTATACAATGGCA 287462 Query 66687 GAGT 66690 |||| Sbjct 287461 GAGT 287458 >seq37 Length=418716 Score = 84.2 bits (92), Expect = 3e-11 Identities = 219/332 (66%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 ||||| |||||||| ||||| ||| | | | ||||| | || || ||||| Sbjct 51283 GTCTCAATAGCATTGAAGAGGTAGGTCCGCTGAGCGGGCTCTTTGATGTAGGTGTCAATA 51224 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | |||| || | || || |||||||| || || || || || ||||| || || Sbjct 51223 AGAAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCAC 51164 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559 | |||||||| ||||| || || || ||| || || | | || || || || || Sbjct 51163 CGAGCCTCGGGGATCTGAACCTCGCCACTAAAACGCTCCACAAGGTTCTCGTTGACAATG 51104 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTG 36617 || ||| ||| ||||| || |||| | || ||||||||||| || | | || Sbjct 51103 CCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATAAAATATTTCTCATCCTCATTG 51044 Query 36618 -TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 36676 || | || ||||| || | ||||| || || | || | || || | ||||| || Sbjct 51043 ATTCGGTTGTTCCAGTCGTGCATATCCTTGGAGAGGTCAATCTCCTCAGCAGTCCAGAAG 50984 Query 36677 GATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 || || || ||||| || ||||| | |||||| Sbjct 50983 GAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 50952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170833708760