Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq25 109 5e-19 >seq25 Length=549874 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || || || || |||||||| || ||||| Sbjct 482149 GCCACCACGAAGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCT 482208 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| |||||||| || |||||| | ||||| || ||||| |||||||| Sbjct 482209 CAGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGG 482268 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| || |||| | || | ||||||| | ||| || Sbjct 482269 AATGCCTTCTTTATCCTGGATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAAC 482328 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 ||| | || | |||||| || ||||| ||||| |||| Sbjct 482329 CTCGAGCGTAATCGTCTTTCCCGTCAAGGTTTTGACGA 482366 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || || || | ||||| ||| | || ||||| |||||||| || || ||||| Sbjct 481922 CCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTT 481981 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || ||||| ||||||||| |||| ||||||||||| || ||||| Sbjct 481982 AGCGTACGTCCA-TCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGG 482040 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| || | | || | || || | | ||||| Sbjct 482041 GATACCCTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCAC 482100 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || || | ||| || || ||||||||||| Sbjct 482101 CTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062518008800