Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01]
239 sequences; 44,257,831 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq13 237 2e-57
>seq13
Length=863668
Score = 237 bits (262), Expect = 2e-57
Identities = 465/681 (68%), Gaps = 20/681 (3%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031
|| || || |||||||| ||||||| | |||||| || | || ||| || || ||||
Sbjct 288136 CCGGGGCACTCATTCGGGCACATCAGCGTCCACTCGCCGT--TCTTTTCGACACGCTTCA 288079
Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091
| ||||||||||| |||||||| || | || || || | | | | ||||| || |
Sbjct 288078 TGAAGAGATCAGGGATCCAAAGGGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCC 288019
Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151
| ||||||| ||||| |||||| | | | ||| || ||||| ||||| | || |
Sbjct 288018 CATGATTCTTTCGCAGATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGA 287959
Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211
|||| | | || ||||| ||||| || || ||||| | ||| | ||| ||||||||
Sbjct 287958 TGGCGAAGGCGCCAGGCCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGA 287899
Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271
| || | || ||| |||| |||||| || |||| ||| || || || | ||| || |
Sbjct 287898 AGACACGCAGCATGGGAACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGC 287839
Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329
| ||||||| || || |||| || || || || || ||||| || || || |
Sbjct 287838 CCGTGGCACGGATGCGGTGAACATTG--AGGCCAATGCCTCCAGCCATCTTTGAAATCAT 287781
Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389
|| ||| || || |||||||| || ||||| || ||||| ||| |||||| | ||
Sbjct 287780 AGCACATGTCTTCAAGGTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAA 287721
Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449
||||| ||||| ||| | | ||||| ||||| || | || |||||||| ||
Sbjct 287720 GAAACAAGACGACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATG 287661
Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CC 72505
|| || |||| |||| || ||||| ||||| | | || || || ||
Sbjct 287660 GGTGAAGAATTTAAGGGACATGAGGTTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCC 287601
Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565
|||| || ||||| || ||||| | ||| ||||||||||| ||||| ||||||
Sbjct 287600 CCAGATG----CCGACCGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATCTTGC 287545
Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGA 72623
|| ||||| | | |||||| ||||| || || || |||||||| | ||| |||
Sbjct 287544 CGTTGATTTTGAGAAGGTAGGACCGCTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGA 287485
Query 72624 AAAGTCTCGTTCGTAAATAAT 72644
|| || || ||||| | |||
Sbjct 287484 AA--TCGCGGTCGTATACAAT 287466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671137194971640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |