Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13 237 2e-57 >seq13 Length=863668 Score = 237 bits (262), Expect = 2e-57 Identities = 465/681 (68%), Gaps = 20/681 (3%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 || || || |||||||| ||||||| | |||||| || | || ||| || || |||| Sbjct 288136 CCGGGGCACTCATTCGGGCACATCAGCGTCCACTCGCCGT--TCTTTTCGACACGCTTCA 288079 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | ||||||||||| |||||||| || | || || || | | | | ||||| || | Sbjct 288078 TGAAGAGATCAGGGATCCAAAGGGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCC 288019 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | ||||||| ||||| |||||| | | | ||| || ||||| ||||| | || | Sbjct 288018 CATGATTCTTTCGCAGATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGA 287959 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 |||| | | || ||||| ||||| || || ||||| | ||| | ||| |||||||| Sbjct 287958 TGGCGAAGGCGCCAGGCCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGA 287899 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | || | || ||| |||| |||||| || |||| ||| || || || | ||| || | Sbjct 287898 AGACACGCAGCATGGGAACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGC 287839 Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | ||||||| || || |||| || || || || || ||||| || || || | Sbjct 287838 CCGTGGCACGGATGCGGTGAACATTG--AGGCCAATGCCTCCAGCCATCTTTGAAATCAT 287781 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || ||| || || |||||||| || ||||| || ||||| ||| |||||| | || Sbjct 287780 AGCACATGTCTTCAAGGTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAA 287721 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 ||||| ||||| ||| | | ||||| ||||| || | || |||||||| || Sbjct 287720 GAAACAAGACGACATCTGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATG 287661 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CC 72505 || || |||| |||| || ||||| ||||| | | || || || || Sbjct 287660 GGTGAAGAATTTAAGGGACATGAGGTTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCC 287601 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 |||| || ||||| || ||||| | ||| ||||||||||| ||||| |||||| Sbjct 287600 CCAGATG----CCGACCGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATCTTGC 287545 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGA 72623 || ||||| | | |||||| ||||| || || || |||||||| | ||| ||| Sbjct 287544 CGTTGATTTTGAGAAGGTAGGACCGCTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGA 287485 Query 72624 AAAGTCTCGTTCGTAAATAAT 72644 || || || ||||| | ||| Sbjct 287484 AA--TCGCGGTCGTATACAAT 287466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137194971640