Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq25 95.1 1e-14 >seq25 Length=549874 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||||||| || | ||| ||||| || || ||| Sbjct 482180 GTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTCGAGCTGCTTGCCA 482239 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | ||||| || ||||| |||||||| ||||||||||| || || || ||| Sbjct 482240 GCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTCGACTTT 482299 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | || | |||||| || ||||| ||| Sbjct 482300 ACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTCTTTCCCGTCAAGGTT 482359 Query 143168 TTTACGA 143174 || |||| Sbjct 482360 TTGACGA 482366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || || | ||||| || | ||| || || ||||| || ||||| ||||| Sbjct 481922 CCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTT 481981 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || || || || ||||||||| |||| ||||||||||| || ||||| Sbjct 481982 AGCGTACGTCCA-TCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGG 482040 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||||| || | | || | || || | | ||| || Sbjct 482041 GATACCCTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCAC 482100 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || | || || || ||||||||||| Sbjct 482101 CTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012885294480