Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq37 152 8e-32 >seq37 Length=418716 Score = 152 bits (168), Expect = 8e-32 Identities = 206/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| | |||||||| ||||| | || ||| | || || Sbjct 50952 ATCTGGCAAATGTACAAGAAGGCTGAAGCCTCCTTCTGGACTGCTGAGGAGATTGACCTC 51011 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | || | | ||| |||| | | ||||| || Sbjct 51012 TCCAAGGATATGCACGACTGGAACAACCGAATCAATGAGGATGAGAAATATTTTATCTCT 51071 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| ||||||||||||||| ||| ||||| || |||||||| || || || || Sbjct 51072 CACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTTGTGGAGCGT 51131 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || | ||| | || || |||| |||||||||||| ||||| |||||||| Sbjct 51132 TTTAGTGGCGAGGTTCAGATCCCCGAGGCTCGGTGCTTTTACGGCTTCCAGATCATGATG 51191 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| | ||||| || | |||||| || ||||||| ||||| Sbjct 51192 GAGAACATTCACTCTGAGACATACTCTCTTCTTATTGACACCTACAT 51238 Score = 96.9 bits (106), Expect = 5e-15 Identities = 223/331 (67%), Gaps = 19/331 (6%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || ||||| || ||||| |||||||| ||| ||| || | ||||| |||||| Sbjct 51420 GCCTTTGCCGCTGTGGAGGGTATCTTCTTCAGTGGTGCTTTCGCATCTATCTTCTGGCTC 51479 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || || ||||| || ||||| | |||||| | || || || |||||| Sbjct 51480 AAGAAGCGTGGTCTGATGCCTGGCCTGACTTTCTCCAACGAGCTCATCTCCCGTGACGAG 51539 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATCTGCGTCCCGAGT-- 125607 || || || ||||||||| || ||||| || || || | || ||| ||| Sbjct 51540 GGTCTTCATACCGACTTTGCCTGCCTGCTGTTCTCTCACCTGAAGAACCGACCC-AGTAA 51598 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | || | || || ||||||| || ||||||||| | ||| || |||| Sbjct 51599 GGAGGT----CGTGGAGGCGGTCATC------GT---CGATGCCGTCAAGATTGAGCAAG 51645 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || || || | || ||| | || | ||||||||| ||| || ||| Sbjct 51646 AGTTCCTGACAGAGGCGCTGCCGTGCGCTCTGCTCGGCATGAACGCCAACCTGATGAAGC 51705 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 | ||||| |||||||| || || ||||| || Sbjct 51706 AATACATCGAGTTTGTTGCTGACCGTCTGCT 51736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056986085640