Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq25 100 2e-16 >seq25 Length=549874 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||| ||||| || ||||| || |||||||| || || ||| | | | | || || Sbjct 481712 ACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTCAGAGTGCGCCCATCCTCC 481771 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | |||||||||||| || || || || ||||| Sbjct 481772 AGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGG 481831 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || |||||||| ||| | || |||||||| ||| || || | ||| || || || Sbjct 481832 ATCTTGCTCTTCACATTGTCGATGGTATCTGACGATTCCACTTCCAGGGTGATCGTCTTC 481891 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| || || || || ||||||||| Sbjct 481892 CCTGTCAATGTCTTCACGAAGATTTGCATA 481921 Score = 98.7 bits (108), Expect = 7e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || || || |||||||||||||| || ||| |||| || | || Sbjct 482466 ATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCCTCGAGCTG 482525 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| ||| | |||| ||| || |||||| ||||| ||||| || || || || Sbjct 482526 CTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTT 482585 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||||| | || || || ||| | || || || ||||| || || ||||| || Sbjct 482586 CGACTTTACGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTCTTACCGGT 482645 Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| || ||||| || ||||| || Sbjct 482646 GAGAGTCTTGACAAAGATCTGCATCTT 482672 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | | ||||| || | || || || ||||| || ||||| |||||| Sbjct 481922 CCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTT 481981 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | || || ||||| | || | |||||| ||||| || Sbjct 481982 AGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 482041 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| ||||||||||| ||| | || |||||||| | ||| || Sbjct 482042 ATACCCTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCACC 482101 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || || || ||||| |||||||| Sbjct 482102 TCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCAT 482148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178145039899