Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq25 100 2e-16 seq92 95.1 1e-14 >seq25 Length=549874 Score = 100 bits (110), Expect = 2e-16 Identities = 155/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || || |||||| || ||||||||||| || | || || |||||| Sbjct 482460 CACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATC-GCTGAGGGTTCGGCCGTCCT 482518 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || | || | ||||||||| || || | | |||||| ||| Sbjct 482519 CGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCT 482578 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || ||| ||| | | | || || || |||| ||||||| ||| | || || || Sbjct 482579 GGATCTTCGACTTTACGTTGTCG--ATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGT 482636 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||||||||||||| || ||||| ||||||||| || Sbjct 482637 CTTACCGGTGAGAGTCTTGACAAAGATCTGCATCTTG 482673 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || ||||| | | |||| || | ||| |||||||||||| ||||| || || Sbjct 481921 ACCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTC-GC 481979 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | ||||||||||||||||| | | || | ||| ||||| ||| | Sbjct 481980 TTAGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAG 482039 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || ||||||||| ||||| ||| | | | |||||||| | ||| ||| Sbjct 482040 GGATACCCTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCA 482099 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || ||||| || |||||||| || ||||| Sbjct 482100 CCTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCAT 482148 >seq92 Length=114681 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || ||||||||||| | || || || | ||||| ||||| Sbjct 39377 TGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCG-AAAGGGTACGGCCATCCTCGAGCTG 39435 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || | |||||||| || || | | ||||||||| || || Sbjct 39436 CTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 39495 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| ||| |||||||| ||||| || || || ||||| || Sbjct 39496 GGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCGAGGGTGATAGTCTTACCCGT 39555 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||| || || |||||||| Sbjct 39556 GAGGGTTTTGACGAAGATCTGCAT 39579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249972974239