Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25 102 7e-17 >seq25 Length=549874 Score = 102 bits (112), Expect = 7e-17 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| || | || | |||||| || || |||||||| | || | Sbjct 481914 TTTGCATACCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGT 481973 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | ||||| ||| || | |||||||||||| || || ||||||| | | |||||| Sbjct 481974 AGTCGCT--TAGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTG 482031 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || ||||| ||||| || ||||| | ||||| ||| || | ||| || || | Sbjct 482032 GTCCGGAGGGATACCCTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGA 482091 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | |||||||| |||||||| || || |||||||| || ||||||| Sbjct 482092 AGATTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCATGC 482150 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| ||||| || | ||| |||||||| | || | ||||| ||||| || ||| Sbjct 482473 GTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCG 482532 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || |||||||| ||||| || || | || || | ||| Sbjct 482533 GCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTCGACTTT 482592 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | || || || | ||||| || || || || ||||| Sbjct 482593 ACGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTCTTACCGGTGAGAGTC 482652 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 482653 TTGACAAAGATCTGCAT 482669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289860730040