Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq35 114 2e-21 seq73 109 9e-20 >seq35 Length=428743 Score = 114 bits (126), Expect = 2e-21 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || ||||| |||| ||| |||||| || ||||||||||| || |||||||| || | Sbjct 255033 CGCCAAACGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATTACCAAGCCCGCCA 255091 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| |||||||||||||||||||| ||||||||| |||||| Sbjct 255092 TCCGGCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 255133 >seq73 Length=179247 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| |||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 141580 GCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCCGCTAT 141638 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || ||||||||||| ||||||||| |||| Sbjct 141639 CCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTC 141677 Score = 87.8 bits (96), Expect = 3e-13 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| ||||| ||||||| || || |||| ||| | Sbjct 141759 TGATCTACGAAGAGACCCGTGGTGTCCTGAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 141818 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || ||||| ||||| || || ||||||||||| || |||| | ||||| | Sbjct 141819 CCGTCACGTACACCGAACACGCCAAGCGCAAGACTGTCACATCACTGGACGTTGTCTACG 141878 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | |||| || |||||||| | | || ||||| || |||| Sbjct 141879 CCCTGAAGCGACAAGGCCGCACCCTATACGGTTTCGGTGGTTA 141921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074981480627