Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13 248 1e-60 seq37 91.5 2e-13 >seq13 Length=863668 Score = 248 bits (274), Expect = 1e-60 Identities = 646/973 (66%), Gaps = 28/973 (3%) Strand=Plus/Minus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 || ||| | |||||| || || ||||| || || |||| | | | ||| | || || Sbjct 288416 CAGGGCCATAGATGCTAGGTTGCAAACAGCAACTTCATCTGGGGCTGAATACTCGATGAT 288357 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||| ||||| ||||| | ||| || |||||||| | || || ||||| || Sbjct 288356 CTCGGTGCAGAGATTGGAGCTGCGGATTGTGCCTAAATTCTTCTGGTTGCTCTTGCGATT 288297 Query 63008 A-CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 63066 || | |||||| || || ||||| || | || ||||| |||||| ||| | || | Sbjct 288296 GGCATG-ATCCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCTTCGAGGATGG 288238 Query 63067 CTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTC----TCTTTCGTA 63121 | | ||||| | || |||||||||| | | | | || || | ||| Sbjct 288237 CATACCAGA-GCTTCTGAGCCTTTATCTTCTGGCGGCCGCGACCCTCAGCCTCATACGTT 288179 Query 63122 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 | || | | | | || ||||| || || | |||| | | || || || |||| Sbjct 288178 TCGT--AGAGAGCC--TCAAACTCATCACCGTAGACATCAGCAAGGCCGGGGCACTCATT 288123 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 ||| ||||||| || |||||| |||| | | || || ||||| ||||||||||| || Sbjct 288122 CGGGCACATCAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGATCAGGGAT 288063 Query 63242 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 |||||| || | || || || | | | | |||||| || || ||||||| || Sbjct 288062 CCAAAGGGCCAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTCTTTCGCAG 288003 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 ||| |||||| | | | ||| || ||||| ||||| | || ||||| | | ||||| Sbjct 288002 ATCTAGGAACTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAGGCGCCAGG 287943 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 ||| ||||| || || ||||| | ||| | ||| |||||||| | || | || ||| || Sbjct 287942 CCGCTTGTTACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACACGCAGCATGGG 287883 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--A 63479 || ||||||||| ||| |||| || || || | ||| || || ||||||| || Sbjct 287882 AACAATACCGTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCACGGATGCG 287823 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 | |||| || || || || || ||||| || || || | || ||| || || Sbjct 287822 GTGAACATTG--AGGCCAATGCCTCCAGCCATCTTTGAAATCATAGCACATGTCTTCAAG 287765 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 || ||||| || ||||| |||||||| || |||||| | || ||||| ||||| Sbjct 287764 GTATCATAAATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAACAAGACGACATC 287705 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| | | ||||| ||||| || | || |||||||| || || || |||| Sbjct 287704 TGGGGTTGCGGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAATTTAAGG 287645 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTAC 63715 || | || ||||| ||||| | | || || || || |||| || || Sbjct 287644 GACATGAGGTTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCCCCAGATG----CCGAC 287589 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 || || ||||| | ||||||||||||||| ||||| |||||| ||| ||||| | | Sbjct 287588 CGCCACGCGCATGATCATGTGCTGAGGTCTCTCAACAATCTTGCCGTTGATTTTGAGAAG 287529 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAA 63833 |||||| ||||| || || || |||||||| | ||| ||||| || || ||||| Sbjct 287528 GTAGGACCGCTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGAAA--TCGCGGTCGTAT 287471 Query 63834 ATAATAACCGAGT 63846 | ||| | |||| Sbjct 287470 ACAATGGCAGAGT 287458 >seq37 Length=418716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || || || ||| || ||||||||||| | || || |||||||| Sbjct 51571 AACAGCAGGCAGGCAAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAG 51512 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || |||||||| || ||||| || || || ||||| | ||| Sbjct 51511 AAAGTCAGGCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGATGCGAAAGCACCA 51452 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAAT 33449 |||||||| || || || || ||||||||||| Sbjct 51451 CTGAAGAAGATACCCTCCACAGCGGCAAAGGCAAT 51417 Score = 86.0 bits (94), Expect = 8e-12 Identities = 196/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||| | || || || || | |||| || | || || |||||||| || || Sbjct 51244 TCTTTGATGTAGGTGTCAATAAGAAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATG 51185 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||| || ||||| || || | |||||||| ||||| || || || ||| || ||| Sbjct 51184 ATCTGGAAGCCGTAAAAGCACCGAGCCTCGGGGATCTGAACCTCGCCACTAAAACGCTCC 51125 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 | | || || || || || || ||| ||| ||||| || |||| | || ||| Sbjct 51124 ACAAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATA 51065 Query 33745 AAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCT 33801 |||||||| || | || | || | || ||||| || | ||||| || || | || Sbjct 51064 AAATATTTCTCATCCTCATTGATTCGGTTGTTCCAGTCGTGCATATCCTTGGAGAGGTCA 51005 Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | || || | ||||| || || || || ||||| || ||||| | |||||| Sbjct 51004 ATCTCCTCAGCAGTCCAGAAGGAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 50952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945338945240