Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq25 143 3e-29 seq92 125 7e-24 seq13 114 1e-20 seq1 107 2e-18 >seq25 Length=549874 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | ||| | ||| |||||||| || |||||||||||||| Sbjct 482443 CCGCCACGAAGACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 482502 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 482503 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 482562 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| ||| ||| | | || | || |||| ||||| | Sbjct 482563 ATGCCTTCCTTATCCTGGATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCCACC 482622 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || |||||||| ||||| || || || |||||||| Sbjct 482623 TCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCAT 482669 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| | || | ||| || ||||| ||||||||||| ||||| Sbjct 482149 GCCACCACGAAGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCT 482208 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| ||||||||||| || | || | ||||||||||| ||||| Sbjct 482209 CAGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGG 482268 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| ||| ||| | | || | || |||| ||||| | Sbjct 482269 AATGCCTTCTTTATCCTGGATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAAC 482328 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| |||| || || || || | ||||| |||| Sbjct 482329 CTCGAGCGTAATCGTCTTTCCCGTCAAGGTTTTGACGA 482366 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| || || |||| || | ||||||||||||||||| ||||| ||||| Sbjct 481922 CCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCGCTT 481981 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| | ||| ||||||||||||||| Sbjct 481982 AGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 482041 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| ||| | | || | ||||| | || || | Sbjct 482042 ATACCCTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCCACC 482101 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || || |||||| Sbjct 482102 TCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCATG 482149 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || |||| ||| | ||||||||| || ||||||||||| || ||| Sbjct 481694 CCGCCACGAAGACGAAGGACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTC 481753 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | ||| || |||||||| ||| Sbjct 481754 AGAGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGG 481813 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||| | || || | Sbjct 481814 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTATCTGACGATTCCACT 481873 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || | || || ||||| || ||||| Sbjct 481874 TCCAGGGTGATCGTCTTCCCTGTCAATGTCTTCACGAAGATTTGCAT 481920 >seq92 Length=114681 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | ||| |||||| || ||||||||||| Sbjct 39353 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAA 39412 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 39413 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 39472 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || ||| | ||||| | Sbjct 39473 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACC 39532 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | || ||||| || || ||||| ||||| |||||||||| Sbjct 39533 TCGAGGGTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATGA 39581 >seq13 Length=863668 Score = 114 bits (126), Expect = 1e-20 Identities = 709/1118 (63%), Gaps = 41/1118 (4%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||||||||| |||||||| ||||| || ||||| | || | ||| || ||| | | Sbjct 288981 GATTGACGACCTGGAACTCGCCTGCCAAGACGCGACGAGAGTAAATGTTTGAAGTGTAAG 288922 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 ||||||| ||||||| || |||| ||| || | ||| | || || ||||| |||| Sbjct 288921 GTTCAAAGCACTCGTTGTTACCCAAGATCTGCGAGGTGCTAGCAGTTGGCATAGGAGCCA 288862 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | |||||| | || |||| |||||| | || || || | | |||| |||| Sbjct 288861 TGAGAAGACTATTGCGTACACCATGCTGCTTGATCTGCTCTTTGAGAGCAGCCCAGTCCC 288802 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGC-GGGG 145294 | || || || | || |||||||| |||||||| | ||||| | | | || | Sbjct 288801 AAAGATCAGAGGGGGTAACATCCCACATATCGTACTGGAGGATGCCTTGGGAAACAGGTG 288742 Query 145295 CTGCCTTGAAAG--GAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCA 145352 ||| | ||| ||| ||| | ||| ||| || | ||| || || Sbjct 288741 AACCCTCGTAAGTAGAA---TAAGTACCCTCCACTTTAGCAATCTCCATTGATGCAGTCA 288685 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 ||| || || || |||||| || ||| |||||||| || || || | Sbjct 288684 AAGCAGCGTGGTACATAGTCTCGAAGATCTGCTTGTTGAGCTGCCGAGCCTCTGGTGATT 288625 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 | | |||||||| || | || | |||||| || || || | || | || || | Sbjct 288624 CAAAAGGCATGCGGAGGGCGAGGAAGGTATCGGCCAGACCTTGGACACCAAGACCAATAG 288565 Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGAT---AGGATATCGATTACGGTCGA 145529 | || || ||| ||||| | | || ||| || ||| || | || ||||| Sbjct 288564 GTCGGTGACGCATATTGCTGTTACGTGC---CTCAATAACAGGGTAATGGTTTGCGTCGA 288508 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589 | | || |||| || || || || || | |||| | | | ||||| |||| | Sbjct 288507 TGACCTTGTTCAGATTGCGGACAACAACTTGAGTAACCTCATGTAGCTTTTGGAAGTTAT 288448 Query 145590 ACCGAGCCTCGTCAACGACCACACAGCTATTG-ACGGCGATCGACGCCAAATTACAAACT 145648 | | | || | |||| | || | | ||| || || || | || ||||| Sbjct 288447 AGCTCTCTGTGTGATAATCCAC-GAATGATGGCAGGGCCATAGATGCTAGGTTGCAAACA 288389 Query 145649 GCCGTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTACATTTGA 145706 || || || | | |||| || | | |||||||| ||| | |||| | || Sbjct 288388 GCAACTTCATCTGGG--GCTGAATACTCGATGATCTCGGTGCAGAGATTGGAGCTGCGGA 288331 Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT-GCACGCGTCCTTGTAGAGCATGTAC 145765 | || || | ||| | ||| || || || | || ||| | ||||||||||||||| | Sbjct 288330 TTGTGCCTAAATTCTTCTGGTTGCTCTTGCGATTGGCATG-ATCCTTGTAGAGCATGAAG 288272 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGC 145822 || ||| || || ||| | || | ||| | | | | || | ||| || Sbjct 288271 GGGTTGCCGGTTTCTGTCTGAGCTTCGAGGATGGCATACCAGAGC---TTCTGAGCCTTT 288215 Query 145823 ACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGCTCCTCAAACGCGG 145880 | || ||| || ||| ||||| | || || |||| |||||| |||||||| | Sbjct 288214 ATCTTCTGGCGGCCGCGACCCTCAGCCTCATACGTTTC--GTAGAGAGCCTCAAACTCAT 288157 Query 145881 AACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGT 145940 ||||||| ||| | |||||||| |||| || || |||||||||| ||| |||||| Sbjct 288156 CACCGTAGACATCAGCAAGGCCGGGGCACTCATTCGGGCACATCAGCGTCCACTCGCCGT 288097 Query 145941 TGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCG 146000 | | ||| |||| ||| || | ||| || | ||| || || | | | ||| || | Sbjct 288096 TCTTTTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCCAAGAAGAGGTCACGAG 288037 Query 146001 CTTTGCAATCCTCAGC--ACCCATGTTTCGCT-TCAAAT-TAAGCACACTATAGATGTCC 146056 | || | | || | |||||| ||| | || || || | || | | | | ||| Sbjct 288036 C---GCGAACTTCCTCCTTCCCATGATTCTTTCGCAGATCTAGGAACTC-AAACACATCC 287981 Query 146057 GCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCC 146113 | |||||| ||||||| ||||| ||||| ||| || || ||| ||||| || || Sbjct 287980 GAGTGCCATGGTTCAAGATAGATGGCGAAGGCGCCAGGCCGCTTGTTACCACCTTGATCG 287921 Query 146114 ACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||| ||| || |||| || ||||| |||| |||||| Sbjct 287920 ACGTAACGAGCCGTGTTATTGAAGACACGCAGCATGGG 287883 >seq1 Length=1779776 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| |||||||| ||| | || || |||||| ||||||||||| ||| ||| Sbjct 1522660 CCTTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 1522601 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| |||||||| || || ||||| ||| || || | | | Sbjct 1522600 TAAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGT 1522541 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| |||| |||| ||| || || || || || || |||| Sbjct 1522540 CGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGA 1522481 Query 131225 AAATCTGCA 131233 | ||||||| Sbjct 1522480 AGATCTGCA 1522472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011389861760