Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13 253 3e-62 seq37 87.8 2e-12 >seq13 Length=863668 Score = 253 bits (280), Expect = 3e-62 Identities = 644/964 (67%), Gaps = 28/964 (3%) Strand=Plus/Minus Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 |||||| || || ||||| || || |||| | | | ||| | || ||||| ||||| Sbjct 288407 AGATGCTAGGTTGCAAACAGCAACTTCATCTGGGGCTGAATACTCGATGATCTCGGTGCA 288348 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCAT 62870 ||||| | ||| || |||||||| | || || ||||| || || | || Sbjct 288347 GAGATTGGAGCTGCGGATTGTGCCTAAATTCTTCTGGTTGCTCTTGCGATTGGCATG-AT 288289 Query 62871 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 62930 |||| || || ||||| || | || ||||| |||||| ||| | || || | ||||| Sbjct 288288 CCTTGTAGAGCATGAAGGGGTTGCCGGTTTCTGTCTGAGCTTCGAGGATGGCATACCAGA 288229 Query 62931 CGACTC-GAGCCTTTAT--TATAGATTT-GTATCTCTTTTC-TCTTTCGTATAGTGTATA 62985 | || |||||||||| | | | | | || | || | ||| | || | | Sbjct 288228 -GCTTCTGAGCCTTTATCTTCTGGCGGCCGCGACCCTCAGCCTCATACGTTTCGT--AGA 288172 Query 62986 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACAT 63045 | | || ||||| || || | |||| | || || || || |||| ||| ||||| Sbjct 288171 GAGCC--TCAAACTCATCACCGTAGACATCAGCAAGGCCGGGGCACTCATTCGGGCACAT 288114 Query 63046 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63105 || || |||||| |||| | | || || ||||| ||||||||||| |||||||| || Sbjct 288113 CAGCGTCCACTCGCCGTTCTTTTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGC 288054 Query 63106 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165 | || || || | | | | |||||| || || ||||||| ||||| ||||| Sbjct 288053 CAAGAAGAGGTCACGAGCGCGAACTTCCTCCTTCCCATGATTCTTTCGCAGATCTAGGAA 287994 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | | | ||| || ||||| ||||| | || ||||| | | |||||||| ||||| Sbjct 287993 CTCAAACACATCCGAGTGCCATGGTTCAAGATAGATGGCGAAGGCGCCAGGCCGCTTGTT 287934 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 || || ||||| | ||| | ||| |||||||| | || | || ||| |||| |||||| Sbjct 287933 ACCACCTTGATCGACGTAACGAGCCGTGTTATTGAAGACACGCAGCATGGGAACAATACC 287874 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 63343 || |||||||| || || || | ||| || || ||||||| || | ||| Sbjct 287873 GTTAGATGTACCGTTAGTTCCAGCGATGTAAGAGCCCGTGGCACGGATGCGGTGAACATT 287814 Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 63403 | || || || || || ||||| || || || | || ||| || || |||||||| Sbjct 287813 G--AGGCCAATGCCTCCAGCCATCTTTGAAATCATAGCACATGTCTTCAAGGTATCATAA 287756 Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463 || ||||| || ||||| ||| |||||| | || ||||| ||||| ||| | | Sbjct 287755 ATTCCCTCGATGCTATCGTCCTTCATGTCGACTAAGAAACAAGACGACATCTGGGGTTGC 287696 Query 63464 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA 63523 ||||| ||||| || | || |||||||| || || || |||| || | || Sbjct 287695 GGTGTTCCGGCATTGAAGAGTGTCGGAGAAGCATGGGTGAAGAATTTAAGGGACATGAGG 287636 Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACG 63579 ||||| ||||| | | || || || || |||| || || || || || Sbjct 287635 TTGTAGGTCTCGAGGACCCTCTCGATGTCGTCTCCCCAGATG----CCGACCGCCACGCG 287580 Query 63580 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63639 ||| | ||||||||||||||| ||||| |||||| ||| ||||| | | |||||| Sbjct 287579 CATGATCATGTGCTGAGGTCTCTCAACAATCTTGCCGTTGATTTTGAGAAGGTAGGACCG 287520 Query 63640 TTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACC 63697 ||||| || || || |||||||| | ||| ||||| || || ||||| | ||| | Sbjct 287519 CTCCAACGTCTTGAAGCCAAAATATTGGTAGTTGAAA--TCGCGGTCGTATACAATGGCA 287462 Query 63698 GAGT 63701 |||| Sbjct 287461 GAGT 287458 >seq37 Length=418716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 220/332 (66%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 ||||| |||||||| ||||| ||| | | | ||||| | || || ||||| Sbjct 51283 GTCTCAATAGCATTGAAGAGGTAGGTCCGCTGAGCGGGCTCTTTGATGTAGGTGTCAATA 51224 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | |||| || | || || |||||||| || || || || || ||||| ||||| Sbjct 51223 AGAAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCAC 51164 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | |||||||| ||||| || || || ||| || || | | || || || || || Sbjct 51163 CGAGCCTCGGGGATCTGAACCTCGCCACTAAAACGCTCCACAAGGTTCTCGTTGACAATG 51104 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT-- 33119 || ||| ||| ||||| || |||| | || ||||||||||| || | || | Sbjct 51103 CCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATAAAATATTTCTCATCCTCATTG 51044 Query 33120 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 || | || ||||| || | ||||| || || | || | || || | ||||| || Sbjct 51043 ATTCGGTTGTTCCAGTCGTGCATATCCTTGGAGAGGTCAATCTCCTCAGCAGTCCAGAAG 50984 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 || || || ||||| || ||||| | |||||| Sbjct 50983 GAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 50952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630107024400