Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq37 107 2e-18 >seq37 Length=418716 Score = 107 bits (118), Expect = 2e-18 Identities = 386/615 (63%), Gaps = 63/615 (10%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||||||||| | ||| ||||| || || || | ||| ||| ||| || | Sbjct 51563 GCAGGCAAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTCAG 51504 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | ||| || || ||||||||||| || || || || ||| |||| || || Sbjct 51503 GCCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATAGATGCGAAAGCACCACTGAAGAA 51444 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT---ACT 93267 ||||| ||||| || ||||| || | | || | |||||| | ||| || | Sbjct 51443 GATACCCTCCACAGCGGCAAAGGCAATCAAGCGCTGGGCAAA---GGTGGAGTTGCGATC 51387 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTT--------------CTTAATACAA--- 93310 ||| ||||| || | ||||| || || || || || | |||| Sbjct 51386 GCTAATCCACTTCAGGGCCCAGTCAGCCTTCTTACGAATGGCAGGAACTAGAGACAAAAT 51327 Query 93311 ------------------------------GGTAGT-------GTTTCGATAGCGTTAAA 93333 |||||| || || ||||| || || Sbjct 51326 TAGCACCATGCGTTTTCAATGTCCAGATGGGGTAGTCCTACTGGTCTCAATAGCATTGAA 51267 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 ||||| |||| | | ||| ||||| || || || | ||||| || | || Sbjct 51266 GAGGTAGGTCCGCTGAGCGGGCTCTTTGATGTAGGTGTCAATAAGAAGAGAGTATGTCTC 51207 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 ||| || | |||||||| || ||||| ||||| || || | ||| || | |||||| Sbjct 51206 AGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCACCGAGCCTCGGGGATCTG 51147 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 || || | ||| | ||| || || || || ||||| || ||||| || || ||||| Sbjct 51146 AACCTCGCCACTAAAACGCTCCACAAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAA 51087 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATC 93570 || |||| || || ||||||| ||||||||| || || | | || | ||| || Sbjct 51086 GAAGGCCAGGATGTGAGAGATAAAATATTTCTCATCCTCATTGATTCGGTTGTTCCAGTC 51027 Query 93571 GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTT 93630 | | ||| || || || || | || || ||||||| || || ||||| || || || Sbjct 51026 GTGCATATCCTTGGAGAGGTCAATCTCCTCAGCAGTCCAGAAGGAGGCTTCAGCCTTCTT 50967 Query 93631 GTACATATCCCATAT 93645 |||||| | ||| || Sbjct 50966 GTACATTTGCCAGAT 50952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859136378360