Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25 129 5e-25 seq92 114 1e-20 seq1 86.0 5e-12 >seq25 Length=549874 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || ||| |||| || ||||||||| | | Sbjct 481920 ATGCAAATCTTCGTGAAGACATTGACAGGGAAGACGATCACCCTGGAAGTGGAATCGTCA 481861 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || || || |||||||||||||| || || || ||| Sbjct 481860 GATACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAA 481801 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | |||||| ||||| | || |||||| Sbjct 481800 CAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGGCGCACTCTGAGTGACTACAAC 481741 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| ||||| || ||| | ||| |||| Sbjct 481740 ATTCAGAAAGAGTCGACCCTGCATCTAGT 481712 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || ||||||| || |||||| | | Sbjct 482148 ATGCAAATATTTGTGAAGACGCTCACTGGAAAGACCATCACTCTGGAGGTGGAATCTTCA 482089 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || ||||| || |||||||||||||| || || || || Sbjct 482088 GATACCATCGACAATGTGAAGAGCAAAATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 482029 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | |||||| || || | ||| ||||| Sbjct 482028 CAACGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGACGTACGCTAAGCGACTACAAT 481969 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || | || ||||| | || ||||| || ||| Sbjct 481968 ATTCAAAAGGAGTCGACATTGCACCTAGTTCTCCGCTTGCGTGGTGGT 481921 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22207 ACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAA 22266 ||| | || |||||||| || ||||| || ||| | |||||||| ||| |||| | || Sbjct 482681 ACAATCGTCAAGATGCAGATCTTTGTCAAGACTCTCACCGGTAAGACGATCACCTTGGAG 482622 Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 ||||| | |||| || | ||| | | || || || || || ||||| || ||| Sbjct 482621 GTGGAGTCTTCCGACACAATCGACAACGTAAAGTCGAAGATCCAGGATAAGGAAGGCATT 482562 Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386 || ||||| || || ||||| || || |||||||| ||| | ||||| ||| ||| || Sbjct 482561 CCTCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTC 482502 Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||||||| || || || || ||| | ||| Sbjct 482501 AGCGATTACAACATCCAGAAGGAGTCTACCCTCCAT 482466 >seq92 Length=114681 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || ||||| || |||| || || ||||| | | | Sbjct 39579 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTAGC 39520 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || || || || Sbjct 39519 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 39460 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | |||||| ||| ||| | || ||||||||| Sbjct 39459 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTTTCGGATTACAAC 39400 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||| | || | || |||| |||| || ||| Sbjct 39399 ATCCAGAAGGAGAGCACCCTCCACCTCGTGCTGCGTCTGCGTGGTGGT 39352 >seq1 Length=1779776 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| || || || || || | || || || || | || || || || || || | | Sbjct 1522472 TGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATTACGCTCGAGGTCGAGTCCTCGG 1522531 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | ||| || | ||| || || || ||||||||||| || || || || || | Sbjct 1522532 ACACGATCGACAATGTAAAAAGCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGC 1522591 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | |||||||| || || ||||| ||| | ||||| ||| || ||||||| ||||||| Sbjct 1522592 AGCGTCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGGACACTCTCCGACTACAACA 1522651 Query 22400 TTCAAAA 22406 | ||||| Sbjct 1522652 TCCAAAA 1522658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726777411035