Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 102 2e-16 seq49 91.5 3e-13 seq37 91.5 3e-13 seq48 86.0 1e-11 seq25 86.0 1e-11 seq12 86.0 1e-11 >seq13 Length=863668 Score = 102 bits (112), Expect = 2e-16 Identities = 413/642 (64%), Gaps = 9/642 (1%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | ||| ||||||||||||||||| | | | ||||| | || Sbjct 289184 CTGAGACTGATCAATAAATGCACCACGATCAGCAGCCATTTGGACAACTGTGCGCTGGGA 289125 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| || ||||| | ||||||||| |||| | || | | || ||||| Sbjct 289124 AATCTCCCAGACGGTTTTGTATAGTGCCTTGACCTCAGTGGGTATACTAGGAATATTCTG 289065 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 ||| || || | ||||||||| | |||||||| | || ||||| ||||||| | Sbjct 289064 GATGGAACCGTTTTCGGCAATAATACGATTCTTCATATTGTCAGACCACAGTCCCA-AAT 289006 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | || || || || | | ||||| || ||||||| || || | ||||| Sbjct 289005 CCACTAGATCCTTGAGTAGCCAGGGATTGACGACCTGGAACTCGCCTGCCAAGACGCGAC 288946 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||||||||| |||||| ||||| ||| || | ||||| | | Sbjct 288945 GAGAGTAAATGTTTGAAGTGTAAGGTTCAAAGCACTCGTTGTTACCCAAGATCTGCGAGG 288886 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACAC 293470 | || || |||||| |||| | ||| || | ||||| || ||||| Sbjct 288885 TGCTAGCAGTTGGCATAGGAGCCATGAGAAGACTATTGCGTACACCATGCTGCTTGATCT 288826 Query 293471 GCGATTCGAGACCCGCCCAGTCCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATAC 293529 || || |||| | ||||||||| | | || || || |||||| |||| | || ||| Sbjct 288825 GCTCTTTGAGAGCAGCCCAGTCCCAAAGA-TCAGAGGGGGTAACATCCCACATATCGTAC 288767 Query 293530 TGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCA 293589 || | ||| || | | |||| || ||||| | || | || | || | | | | | Sbjct 288766 TGGAGGATGCCTTGGGAAACAGGTGAACCCTCGTAAGTAGAATAAGTACCCTCCACTTTA 288707 Query 293590 GAGAGCTCGCAAGATGC-CTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTT 293648 | | ||| ||||| |||| |||||| ||| || ||||||||||| ||| Sbjct 288706 GCAATCTCCATTGATGCAGTCAA-AGCAGCGTGGTACATAGTCTCGAAGATCTGCTTGTT 288648 Query 293649 GAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAG 293708 ||||| ||||||| || ||||| ||||| || || ||| ||| ||| Sbjct 288647 GAGCTGCCGAGCCTCTGGTGATTCAAAAGGCATGCGGAGGGCGAGGAAGGTATCGGCCAG 288588 Query 293709 ACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750 ||| || ||||| | ||||| || || ||||| | ||||| Sbjct 288587 ACCTTGGACACCAAGACCAATAGGTCGGTGACGCATATTGCT 288546 >seq49 Length=314595 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||| || || || |||| |||||||||||| || |||| ||||| ||||| ||| Sbjct 188446 GGTGAAGACCTTTGCAACTGCACTTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAAC 188387 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | |||||||||| || || ||||| ||||||||| || | Sbjct 188386 CAGACGCACCTGCGCCTCAAGCGTGGTCGTCGTTACGGTCTGTGCGGTCCCAACGGTTCC 188327 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||||||||| || | ||| |||| || ||||| || ||| Sbjct 188326 GGCAAGTCGACTCTGATGCGCGCCATCAACAATGAACAGGTGGAGGGTTTTCCCAA-GCA 188268 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || || |||||| | ||||| Sbjct 188267 GAGCGAGGTCAAGACCGTCTTCGTCGAACACGACCTTGACTC 188226 >seq37 Length=418716 Score = 91.5 bits (100), Expect = 3e-13 Identities = 264/402 (66%), Gaps = 6/402 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| | || ||||| ||||||||||||||| ||||| | Sbjct 51829 TCAAAGAAGTTGGTCTTGCCACCGAGCGAGATGTTCTCCATGAAGTCGAACGGGTTGGAA 51770 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| ||| || || || || |||| | ||||| || |||||||| | Sbjct 51769 GAGCGGTAGACCTTCTCATTACCCAGAGCGACGAGCAGACGGTCAGCAACAAACTCGATG 51710 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || |||||| | | ||||||||| | || | || || | ||||| | | Sbjct 51709 TATTGCTTCATCAGGTTGGCGTTCATGCCGAGCAGAGCGCACGGCAGCGCCTCTGTCAGG 51650 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || | || | || || || | | | |||| ||| || | | Sbjct 51649 AACTCTTGCTCAATCTTGACGGCATCGACGATGACCGCCTCCACGACCTCCTTACTGGGT 51590 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGT--GCAGACCCTCGTCGC 251860 ||||| ||| | ||| |||| || | |||| || ||| | ||||||||||| | Sbjct 51589 CGGTTCTTCAGGTGAGAGAACAGCAGGCAGGCAAA--GTCGGTATGAAGACCCTCGTCAC 51532 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||||| ||||||||| | | |||||||||||||| ||||| ||| ||||||||| Sbjct 51531 GGGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGGCATCAGACCACGCTTCTTGAGCCAGA 51472 Query 251921 AGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 |||| | || |||| | ||| ||| | | |||||| ||| Sbjct 51471 AGATAGATGCGAAAGCA-CCACTGAAGAAGATACCCTCCACA 51431 >seq48 Length=316520 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 7953 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 8012 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 8013 CCCGCATCGGGC 8024 >seq25 Length=549874 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 50659 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 50718 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 50719 CCCGCATCGGGC 50730 >seq12 Length=887725 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 424130 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 424189 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 424190 CCCGCATCGGGC 424201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833652570999