Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25 158 2e-33 seq92 152 9e-32 seq1 138 2e-27 seq49 104 4e-17 >seq25 Length=549874 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || ||||| || |||||||| |||||| | Sbjct 482443 CCGCCACGAAGACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 482502 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| ||| Sbjct 482503 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 482562 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| | ||| ||| ||||| ||||| | || || || Sbjct 482563 ATGCCTTCCTTATCCTGGATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCCACC 482622 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || || ||||| |||||||| || |||||||| Sbjct 482623 TCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCAT 482669 Score = 113 bits (124), Expect = 8e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || ||||| || || || ||||| || ||| Sbjct 482150 CCACCACGAAGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGCTC 482209 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || |||||||| ||| Sbjct 482210 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGAGGA 482269 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| || || || ||||| | ||| ||| ||||| ||||| | ||| || || Sbjct 482270 ATGCCTTCTTTATCCTGGATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACTCAACC 482329 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | || || || |||||||| | ||| ||||||| Sbjct 482330 TCGAGCGTAATCGTCTTTCCCGTCAAGGTTTTGACGA 482366 >seq92 Length=114681 Score = 152 bits (168), Expect = 9e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | ||| || ||| ||| || |||||||| ||||| || Sbjct 39353 CCACCACGCAGACGCAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAA 39412 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || ||||| || || Sbjct 39413 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 39472 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| | |||||| ||||||||||| ||| || || || Sbjct 39473 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTC-GCTAGACTCCAC 39531 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||||||||| |||||||| |||||||| || Sbjct 39532 CTCGAGGGTGATAGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATGAT 39582 >seq1 Length=1779776 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || ||||||||||||| || || || | |||||| || ||||| || Sbjct 1522658 TTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATA 1522599 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || || ||||| |||||||| || ||||| || || ||| Sbjct 1522598 AGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGTCG 1522539 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 || ||||| | || || || || | || ||||| || |||||||||||||||||||| Sbjct 1522538 ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAG 1522479 Query 68454 ATCTGCATTAT 68464 ||||||| ||| Sbjct 1522478 ATCTGCACTAT 1522468 >seq49 Length=314595 Score = 104 bits (114), Expect = 4e-17 Identities = 320/485 (66%), Gaps = 19/485 (4%) Strand=Plus/Plus Query 225524 ACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC---AGCATCA 225580 ||||| | ||||| | ||||| || || ||||| |||||||||||||| ||| ||| Sbjct 187977 ACGTTCTTCACGTCGAGATGGTTGGTGGGCTCGTCGAGAAGCAGGATGTCGGGAGCTTCA 188036 Query 225581 ATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATT 225640 | || | || || |||| ||||||||| ||||| || || || |||| |||| Sbjct 188037 AAGACG---GCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAGAGAGGGCAGTGATT 188093 Query 225641 GAAACAGAGTGCTT---AGCTTCGTCAAAGCCGTACTC---CAGGAGCGTCTGGATAATG 225694 | | ||| | | ||| ||| || |||| | || |||| | | || || | Sbjct 188094 TCACCTGAGATCATGGAAGC--CGTGAA-GCCGAATTCGATCAGGCGAGCCTCGACC-TC 188149 Query 225695 CGCTCGGG-AGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGT 225753 |||| ||| ||| | | |||| || | | | | | ||||| ||| Sbjct 188150 CGCTTGGGTAGACTCGACACCGGCCTCGCTCAGCTTCTTCATGGTCCAATCAATCGTGGT 188209 Query 225754 CATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAGAAG 225812 ||| || | | | | || ||||| |||||| || ||| | || ||| || || | | Sbjct 188210 CATTTCAGTGTCGGCCGAGTCAAGGTCGTGTTCGACGAAGACGGTCTTGACCTCGCTCTG 188269 Query 225813 CATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCG 225872 | | ||| || ||||||| ||| |||| || || || | ||| || |||||| | Sbjct 188270 CTT-GGGAAAACCCTCCACCTGTTCATTGTTGATGGCGCGCATCAGAGTCGACTTGCCGG 188328 Query 225873 CGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGT 225932 |||||||||||| || |||||| || || ||||||| | ||| |||| || Sbjct 188329 AACCGTTGGGACCGCACAGACCGTAACGACGACCACGCTTGAGGCGCAGGTGCGTCTGGT 188388 Query 225933 TCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCT 225992 | || ||||||||| |||| ||||| || ||||| ||| | ||| ||||| ||||| | Sbjct 188389 TGAGCAGGATCTTGGCACCGTAGGCGAGCGAGAAAGTGCAGTTGCAAAGGTCTTCACCAT 188448 Query 225993 CCTCG 225997 | ||| Sbjct 188449 CGTCG 188453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619646653080