Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq25 127 2e-24 >seq25 Length=549874 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | ||| | ||||| || || || |||||||||||| Sbjct 482440 ATACCGCCACGAAGACGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCG 482499 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || || || || || || || ||| |||| |||||||| ||||| ||| Sbjct 482500 CTGAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGA 482559 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| |||| | || | ||||||| || || Sbjct 482560 GGAATGCCTTCCTTATCCTGGATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCC 482619 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||| || ||||| ||||| || ||||| |||||||| Sbjct 482620 ACCTCCAAGGTGATCGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCAT 482669 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | |||| ||| | || || ||||| ||||||||||| || ||| Sbjct 481694 CCGCCACGAAGACGAAGGACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCACTC 481753 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| || ||| || || || |||||||| |||||||||| ||||||||||| || Sbjct 481754 AGAGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGGGGG 481813 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| || | | || | ||| || | ||||| || Sbjct 481814 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATGGTATCTGACGATTCCACT 481873 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | ||| || || |||| || || || || || ||||| Sbjct 481874 TCCAGGGTGATCGTCTTCCCTGTCAATGTCTTCACGAAGATTTGCAT 481920 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | | ||||| || | || || || |||||||| ||||| ||| Sbjct 481919 ATACCACCACGCAAGCGGAGAACTAGGTGCAATGTCGACTCCTTTTGAATATTGTAGTCG 481978 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||||| ||| || || || |||||||| |||||||||| || ||||||||| Sbjct 481979 CTTAGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGA 482038 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| || || || | | || | ||| || | ||||| Sbjct 482039 GGGATACCCTCCTTGTCCTGGATTTTGCTCTTCACATTGTCGATGGTATCTGAAGATTCC 482098 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || || || || || || || ||||| || |||||| Sbjct 482099 ACCTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCACAAATATTTGCATG 482149 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||| ||||||| || || || || || || || ||| Sbjct 482180 GTGGATTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCGTCCTCGAGCTGCTTGCCA 482239 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || || ||||| ||||| ||||||||||||||||| || ||||| ||| Sbjct 482240 GCAAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTCGACTTT 482299 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || || || || | || | ||| || || |||| ||| Sbjct 482300 ACGTTGTCGATCGTGTCGGATGACTCAACCTCGAGCGTAATCGTCTTTCCCGTCAAGGTT 482359 Query 114366 TTTAC 114370 || || Sbjct 482360 TTGAC 482364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133176227268