Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq25 122 2e-22 seq1 114 3e-20 seq61 86.0 1e-11 >seq25 Length=549874 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || || ||||| || || ||| ||| || || ||||| Sbjct 482458 AGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCGGCCGTCC 482517 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||||||||| || || || ||||| |||||| Sbjct 482518 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 482577 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| |||| || ||||| || || | ||| || || || || | ||||||||| Sbjct 482578 TGGATCTTCGACTTTACGTTGTCGATTGTGTCGGAAGACTCCACCTCCAAGGTGATCGTC 482637 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| || |||||||| Sbjct 482638 TTACCGGTGAGAGTCTTGACAAAGATCTGCAT 482669 Score = 107 bits (118), Expect = 5e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | ||| || ||||| | || ||||| || || || ||||| Sbjct 481691 TGCCCGCCACGAAGACGAAGGACTAGATGCAGGGTCGACTCTTTCTGAATGTTGTAGTCA 481750 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || ||||| || || || | || || || || ||||| ||||| ||||| Sbjct 481751 CTCAGAGTGCGCCCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGG 481810 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| || || || |||||||| || ||| ||||| || || || | ||| |||||| Sbjct 481811 GGGATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATGGTATCTGACGATTC 481869 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||||||||||||| |||| ||||| ||||| || ||||| Sbjct 481870 CACTTCCAGGGTGATCGTCTTCCCTGTCAATGTCTTCACGAAGATTTGCAT 481920 Score = 100 bits (110), Expect = 7e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| |||||| ||||| ||||| || || | || || || || ||| Sbjct 481958 TCCTTTTGAATATTGTAGTCGCTTAGCGTACGTCCATCCTCCAGCTGCTTACCAGCAAAG 482017 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || ||||| || || ||||| || || || ||||||||||| ||| ||||| || Sbjct 482018 ATGAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATTTT-GCTCTTCACATT 482076 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| || || || ||||| ||||| || || || ||||| || Sbjct 482077 GTCGATGGTATCTGAAGATTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGCGTCTTCAC 482136 Query 288462 GAATATCTGCAT 288473 ||||| ||||| Sbjct 482137 AAATATTTGCAT 482148 Score = 100 bits (110), Expect = 7e-16 Identities = 156/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| ||| || || || || |||| Sbjct 482146 CATG-CCACCACGAAGACGGAGCACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGT 482204 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || || || || ||||| || | || || || || || ||||| ||||| || Sbjct 482205 CGCTCAGGGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGG 482264 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||||||||||||||| |||| || ||||| || || | ||| || | Sbjct 482265 GAGGAATGCCTTCTTTATCCTGGATCTTCGACTTTACGTTGTCGATCGTGTCGGATGACT 482324 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || |||||||| |||||||| || |||| || ||||||| Sbjct 482325 CAACCTCGAGCGTAATCGTCTTTCCCGTCAAGGTTTTGACGA 482366 >seq1 Length=1779776 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || ||||||| ||| || || ||||| || | || || || |||||||| Sbjct 1522658 TTTTGGATGTTGTAGTCGGAGAGTGTCCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATA 1522599 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | ||||| || || || |||||||| || ||| || || || Sbjct 1522598 AGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTTTTTACATTGTCG 1522539 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | || || || || |||||||| || ||||| || || || ||||||||||| Sbjct 1522538 ATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCCGTGAGGGTCTTGACGAAG 1522479 Query 288466 ATCTGCATTAT 288476 ||||||| ||| Sbjct 1522478 ATCTGCACTAT 1522468 >seq61 Length=218007 Score = 86.0 bits (94), Expect = 1e-11 Identities = 226/338 (67%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGC-AATCTCGAACCGAACTGGCCCTC 325380 |||||||| ||||| ||| ||| |||||| ||| || | |||||||| | || Sbjct 192014 ATATATCGAGCACTGGCGGCATCGGAACCACC-TGCTAACCGAGAACCGAAATTTCCGCT 191956 Query 325381 CGG--CAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATG 325438 || ||| | | |||| ||||||| ||||| | | ||| |||||| | ||| Sbjct 191955 TGGTTCAAGAT--AATTGACGTTATTGGACCCGACGAAGTTCTGGGCAAGGCCGATGATC 191898 Query 325439 GTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTG 325498 ||| |||| || | |||||||||||||||||| | || || | ||||||||| Sbjct 191897 GTCTGCTGCAAGGACGTCTCGCCATGGTGATAGGCGGTTTGTTCCGAGACGTAACCGGCT 191838 Query 325499 AACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTC 325558 || | |||||| || | || | ||| || |||||| | |||||| || || Sbjct 191837 AATTCAATAACCTTTTTATCCTTGGTTAGATTTCGTTTGAAACAGGCATATATGACCTTT 191778 Query 325559 CGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGC 325618 | ||| || || || |||||||| | ||| || || ||| || || || | || Sbjct 191777 CTCTGACCGGGCTTTAAGCCATCAACAATCGAGGGGATAGATCG---CATATTGT-CTGC 191722 Query 325619 GA----GAACAAAATAAGTTCCTTGTCGATGAAGTCGG 325652 | ||||| ||| || ||||||| || |||||||| Sbjct 191721 CATACTGAACAGAATGAGCTCCTTGTTGACGAAGTCGG 191684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650787677042