Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq61 86.0 1e-11 >seq61 Length=218007 Score = 86.0 bits (94), Expect = 1e-11 Identities = 226/338 (67%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 297443 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGC-AATCTCGAACCGAACTGGCCCTC 297501 |||||||| ||||| ||| ||| |||||| ||| || | |||||||| | || Sbjct 192014 ATATATCGAGCACTGGCGGCATCGGAACCACC-TGCTAACCGAGAACCGAAATTTCCGCT 191956 Query 297502 CGG--CAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATG 297559 || ||| | | |||| ||||||| ||||| | | ||| |||||| | ||| Sbjct 191955 TGGTTCAAGAT--AATTGACGTTATTGGACCCGACGAAGTTCTGGGCAAGGCCGATGATC 191898 Query 297560 GTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTG 297619 ||| |||| || | |||||||||||||||||| | || || | ||||||||| Sbjct 191897 GTCTGCTGCAAGGACGTCTCGCCATGGTGATAGGCGGTTTGTTCCGAGACGTAACCGGCT 191838 Query 297620 AACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTC 297679 || | |||||| || | || | ||| || |||||| | |||||| || || Sbjct 191837 AATTCAATAACCTTTTTATCCTTGGTTAGATTTCGTTTGAAACAGGCATATATGACCTTT 191778 Query 297680 CGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGC 297739 | ||| || || || |||||||| | ||| || || ||| || || || | || Sbjct 191777 CTCTGACCGGGCTTTAAGCCATCAACAATCGAGGGGATAGATCG---CATATTGT-CTGC 191722 Query 297740 GA----GAACAAAATAAGTTCCTTGTCGATGAAGTCGG 297773 | ||||| ||| || ||||||| || |||||||| Sbjct 191721 CATACTGAACAGAATGAGCTCCTTGTTGACGAAGTCGG 191684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876622774650