Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosellinia_20necatrix_20[genbank_20GCA_5F001445595.3_202017-02-01] 239 sequences; 44,257,831 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq13 179 4e-40 >seq13 Length=863668 Score = 179 bits (198), Expect = 4e-40 Identities = 612/953 (64%), Gaps = 22/953 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | || |||| |||||| || ||||| ||| ||||| ||||| || | ||| Sbjct 287487 AACTACCAATATTTTGGCTTCAAGACGTTGGAGCGGTCCTACCTTCTCAAAATCAACGGC 287546 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||| |||| || || || | |||||||| || |||| || || || Sbjct 287547 AAGATTGTTGAGAGACCTCAGCACATGATCATGCGCGTGGCGGTCGGCATCTGGGGAGAC 287606 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| || || | | | | || |||| || | ||| || Sbjct 287607 GACATCGAGAGGGTCCTCGAGACCTACAACCTCATGTCCCTTAAATTCTTCACCCATGCT 287666 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| || ||||| || || || ||| || |||||||| || |||||| | | Sbjct 287667 TCTCCGACACTCTTCAATGCCGGAACACCGCAACCCCAGATGTCGTCTTGTTTCTTAGTC 287726 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| |||| ||||||| || | | | ||| ||||| | || Sbjct 287727 GAC-ATGAAGGACGATAGCATCGAGGGAATTTATGATACCTTGAAGACATGTGCTATGAT 287785 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||||| || || || || || ||| ||| ||| | | ||||||| ||| || || Sbjct 287786 TTCAAAGATGGCTGGAGGCATTGGCCTCAATGTTCACCGCATCCGTGCCACGGGCTCTTA 287845 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| || || || || || || ||||| | || || ||||| || |||||||| || Sbjct 287846 CATCGCTGGAACTAACGGTACATCTAACGGTATTGTTCCCATGCTGCGTGTCTTCAATAA 287905 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | |||| || ||||| || || |||||| | | || || | ||||| ||||||| Sbjct 287906 CACGGCTCGTTACGTCGATCAAGGTGGTAACAAGCGGCCTGGCGCCTTCGCCATCTATCT 287965 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 || || |||||| |||| ||| | ||| | || ||||||||||| || || || || Sbjct 287966 TGAACCATGGCACTCGGATGTGTTTGAGTTCCTAGATCTGCGAAAGAATCATGGGAAGGA 288025 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | | || | |||||||||| || || ||| | || || || || ||||| || Sbjct 288026 GGAAGTTCGCGCTCGTGACCTCTTCTTGGCCCTTTGGATCCCTGATCTCTTCATGAAGCG 288085 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||||| || ||| || |||| || | || || ||||| || ||||| || | || Sbjct 288086 TGTCGAAAAGAACGGCGAGTGGACGCTGATGTGCCCGAATGAGTGCCCCGGCCTTGCTGA 288145 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCA----------GG 94423 || | || ||| || || | |||| |||||| || | || Sbjct 288146 TGTCTACGG---------TGATGAGTTTGAGGCTCTCTACGAAACGTATGAGGCTGAGGG 288196 Query 94424 GCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGG 94483 | |||| | || || | ||| |||||| ||| || ||| | || | ||| Sbjct 288197 TCGCGGCC-GCCAGAAGATAAAGGCTCAGAAGCTCTGGTATGCCATCCTCGAAGCTCAGA 288255 Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGC 94543 || || || | |||| ||| | | |||||| || ||| |||| ||||||| Sbjct 288256 CAGAAACCGGCAACCCCTTCATGCTCTACAAGGATCATGCCAATCGCAAGAGCAACCAGA 288315 Query 94544 AGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTC 94603 || | | || ||| ||||| ||||| ||||||||||| |||||||| | | | Sbjct 288316 AGAATTTAGGCACAATCCGCAGCTCCAATCTCTGCACCGAGATCATCGAGTATTCAGCCC 288375 Query 94604 CGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTG 94656 | || || ||||||| || ||||| | || || |||| | | |||||| Sbjct 288376 CAGATGAAGTTGCTGTTTGCAACCTAGCATCTATGGCCCTGCCATCATTCGTG 288428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721722014440